Protein–RNA interactions for Protein: A2RUB6

CCDC66, Coiled-coil domain-containing protein 66, humanhuman

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC66A2RUB6 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 SEC24B-201ENST00000265175 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 APOA1-205ENST00000375329 927 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AL162726.2-201ENST00000438986 1017 ntBASIC15.51■□□□□ 0.07
CCDC66A2RUB6 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AC103988.2-201ENST00000561804 725 ntBASIC15.51■□□□□ 0.07
CCDC66A2RUB6 MIR4745-201ENST00000577608 62 ntBASIC15.51■□□□□ 0.07
CCDC66A2RUB6 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AL132655.2-201ENST00000596276 594 ntBASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AP001002.3-201ENST00000623482 206 ntBASIC15.51■□□□□ 0.07
CCDC66A2RUB6 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 AC145098.2-201ENST00000623593 3026 ntBASIC15.51■□□□□ 0.07
CCDC66A2RUB6 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 TRMT61A-202ENST00000389749 3229 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CCDC66A2RUB6 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AC139712.1-201ENST00000378256 1875 ntBASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 STARD8-203ENST00000374599 4841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AC007541.1-201ENST00000570282 1469 ntBASIC15.5■□□□□ 0.07
CCDC66A2RUB6 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 AL031719.1-201ENST00000623365 2587 ntBASIC15.5■□□□□ 0.07
CCDC66A2RUB6 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 SMARCA2-209ENST00000382203 5867 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 ITGA2B-201ENST00000262407 3333 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CCDC66A2RUB6 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 AL445209.1-201ENST00000607269 3491 ntBASIC15.49■□□□□ 0.07
CCDC66A2RUB6 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC15.49■□□□□ 0.07
CCDC66A2RUB6 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms