Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 FAM122B-202ENST00000343004 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 CTBP2P5-201ENST00000454986 1264 ntBASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 AC009955.4-201ENST00000597192 544 ntBASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 AC021016.3-201ENST00000608367 477 ntBASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 DSN1-203ENST00000373750 2233 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
CLHC1Q8NHS4 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 ST13P19-201ENST00000442505 1124 ntBASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 AC005962.1-201ENST00000584100 773 ntBASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
CLHC1Q8NHS4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AC004241.5-201ENST00000623870 2448 ntBASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms