Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.46□□□□□ -0.09
USP39Q53GS9 RN7SL277P-201ENST00000481521 288 ntBASIC14.46□□□□□ -0.09
USP39Q53GS9 RPL18AP8-201ENST00000486071 528 ntBASIC14.46□□□□□ -0.09
USP39Q53GS9 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USP39Q53GS9 MIR5196-201ENST00000578146 115 ntBASIC14.46□□□□□ -0.09
USP39Q53GS9 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
USP39Q53GS9 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
USP39Q53GS9 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
USP39Q53GS9 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.46□□□□□ -0.09
USP39Q53GS9 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USP39Q53GS9 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC14.46□□□□□ -0.09
USP39Q53GS9 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USP39Q53GS9 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
USP39Q53GS9 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
USP39Q53GS9 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.46□□□□□ -0.1
USP39Q53GS9 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
USP39Q53GS9 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USP39Q53GS9 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USP39Q53GS9 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
USP39Q53GS9 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
USP39Q53GS9 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USP39Q53GS9 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
USP39Q53GS9 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC14.46□□□□□ -0.1
USP39Q53GS9 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.45□□□□□ -0.1
USP39Q53GS9 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
USP39Q53GS9 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
USP39Q53GS9 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.45□□□□□ -0.1
USP39Q53GS9 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC14.45□□□□□ -0.1
USP39Q53GS9 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC14.45□□□□□ -0.1
USP39Q53GS9 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
USP39Q53GS9 AC024293.1-201ENST00000467930 498 ntBASIC14.45□□□□□ -0.1
USP39Q53GS9 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.45□□□□□ -0.1
USP39Q53GS9 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC14.45□□□□□ -0.1
USP39Q53GS9 AC027237.1-201ENST00000560942 655 ntBASIC14.45□□□□□ -0.1
USP39Q53GS9 AC140658.4-201ENST00000561990 352 ntBASIC14.45□□□□□ -0.1
USP39Q53GS9 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC14.45□□□□□ -0.1
USP39Q53GS9 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.45□□□□□ -0.1
USP39Q53GS9 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 IL9RP3-201ENST00000442856 1674 ntBASIC14.45□□□□□ -0.1
USP39Q53GS9 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.45□□□□□ -0.1
USP39Q53GS9 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.45□□□□□ -0.1
USP39Q53GS9 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
USP39Q53GS9 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
USP39Q53GS9 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
USP39Q53GS9 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 AC152010.1-201ENST00000415779 2006 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 ST20-AS1-201ENST00000560255 4223 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.44□□□□□ -0.1
USP39Q53GS9 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 AP002353.1-201ENST00000528257 1599 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 RN7SKP109-201ENST00000410592 316 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 PSMD4P1-201ENST00000433951 1109 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.44□□□□□ -0.1
USP39Q53GS9 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC14.44□□□□□ -0.1
USP39Q53GS9 AC010234.1-201ENST00000494599 870 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC14.44□□□□□ -0.1
USP39Q53GS9 AL022344.2-201ENST00000568976 968 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC14.44□□□□□ -0.1
USP39Q53GS9 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms