Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC13.73□□□□□ -0.21
PCDH1Q08174 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.73□□□□□ -0.21
PCDH1Q08174 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.73□□□□□ -0.21
PCDH1Q08174 EID1-202ENST00000560490 584 ntTSL 3 BASIC13.73□□□□□ -0.21
PCDH1Q08174 AC013355.1-201ENST00000562625 723 ntBASIC13.73□□□□□ -0.21
PCDH1Q08174 AC093752.3-201ENST00000567343 901 ntBASIC13.73□□□□□ -0.21
PCDH1Q08174 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC13.73□□□□□ -0.21
PCDH1Q08174 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
PCDH1Q08174 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
PCDH1Q08174 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
PCDH1Q08174 AC073548.1-201ENST00000624088 1882 ntBASIC13.73□□□□□ -0.21
PCDH1Q08174 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC13.73□□□□□ -0.21
PCDH1Q08174 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
PCDH1Q08174 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
PCDH1Q08174 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 FAM90A12P-201ENST00000519497 2375 ntBASIC13.73□□□□□ -0.21
PCDH1Q08174 FAM90A24P-201ENST00000520792 2369 ntBASIC13.73□□□□□ -0.21
PCDH1Q08174 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC13.73□□□□□ -0.21
PCDH1Q08174 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
PCDH1Q08174 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
PCDH1Q08174 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
PCDH1Q08174 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
PCDH1Q08174 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
PCDH1Q08174 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
PCDH1Q08174 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.72□□□□□ -0.21
PCDH1Q08174 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
PCDH1Q08174 SSR1P1-201ENST00000407630 814 ntBASIC13.72□□□□□ -0.21
PCDH1Q08174 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC13.72□□□□□ -0.21
PCDH1Q08174 TSPY25P-201ENST00000429463 745 ntBASIC13.72□□□□□ -0.21
PCDH1Q08174 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.72□□□□□ -0.21
PCDH1Q08174 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
PCDH1Q08174 AC106794.1-201ENST00000506935 792 ntBASIC13.72□□□□□ -0.21
PCDH1Q08174 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.72□□□□□ -0.21
PCDH1Q08174 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.72□□□□□ -0.21
PCDH1Q08174 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.72□□□□□ -0.21
PCDH1Q08174 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 AL157813.1-201ENST00000612996 587 ntBASIC13.72□□□□□ -0.21
PCDH1Q08174 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.72□□□□□ -0.21
PCDH1Q08174 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC13.72□□□□□ -0.21
PCDH1Q08174 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 DUT-208ENST00000559540 1441 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC13.72□□□□□ -0.21
PCDH1Q08174 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.72□□□□□ -0.21
PCDH1Q08174 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.72□□□□□ -0.21
PCDH1Q08174 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
PCDH1Q08174 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
PCDH1Q08174 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC13.71□□□□□ -0.21
PCDH1Q08174 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCDH1Q08174 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.71□□□□□ -0.21
PCDH1Q08174 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.71□□□□□ -0.21
PCDH1Q08174 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.71□□□□□ -0.21
PCDH1Q08174 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC13.71□□□□□ -0.21
PCDH1Q08174 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
PCDH1Q08174 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCDH1Q08174 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCDH1Q08174 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
PCDH1Q08174 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCDH1Q08174 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCDH1Q08174 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
PCDH1Q08174 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
PCDH1Q08174 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms