Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC139530.3-201ENST00000620344 690 ntBASIC12.59□□□□□ -0.39
SOX2P48431 ETV2-208ENST00000621247 941 ntTSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 AC007663.2-201ENST00000506039 2228 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 MYOM3-201ENST00000338909 2693 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 TNNI1-207ENST00000622580 6142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 MARK2P9-201ENST00000430958 1727 ntBASIC12.59□□□□□ -0.39
SOX2P48431 MFSD11-217ENST00000590514 1891 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC12.59□□□□□ -0.39
SOX2P48431 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
SOX2P48431 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC12.59□□□□□ -0.39
SOX2P48431 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC12.58□□□□□ -0.39
SOX2P48431 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
SOX2P48431 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC12.58□□□□□ -0.39
SOX2P48431 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
SOX2P48431 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
SOX2P48431 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
SOX2P48431 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 HNRNPA1P27-201ENST00000412087 955 ntBASIC12.58□□□□□ -0.4
SOX2P48431 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.58□□□□□ -0.4
SOX2P48431 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC12.58□□□□□ -0.4
SOX2P48431 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 API5-211ENST00000534695 560 ntTSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 PTP4A1P2-201ENST00000546033 454 ntBASIC12.58□□□□□ -0.4
SOX2P48431 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC12.58□□□□□ -0.4
SOX2P48431 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.58□□□□□ -0.4
SOX2P48431 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 SMARCA4-205ENST00000450717 5506 ntTSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 KIAA0930-201ENST00000251993 2723 ntTSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC12.58□□□□□ -0.4
SOX2P48431 AL445250.1-201ENST00000641671 2259 ntBASIC12.58□□□□□ -0.4
SOX2P48431 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 F2-205ENST00000530231 1849 ntTSL 5 BASIC12.58□□□□□ -0.4
SOX2P48431 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
SOX2P48431 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC12.57□□□□□ -0.4
SOX2P48431 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
SOX2P48431 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC12.57□□□□□ -0.4
SOX2P48431 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SOX2P48431 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
SOX2P48431 COG5-201ENST00000297135 4060 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC12.57□□□□□ -0.4
SOX2P48431 MFSD8-241ENST00000641686 4991 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
SOX2P48431 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
SOX2P48431 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms