Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
NKX2-1P43699 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC11.71□□□□□ -0.54
NKX2-1P43699 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC11.71□□□□□ -0.54
NKX2-1P43699 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.54
NKX2-1P43699 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC11.71□□□□□ -0.54
NKX2-1P43699 LINC01165-201ENST00000445190 1623 ntBASIC11.71□□□□□ -0.54
NKX2-1P43699 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
NKX2-1P43699 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
NKX2-1P43699 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC11.71□□□□□ -0.54
NKX2-1P43699 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC11.71□□□□□ -0.54
NKX2-1P43699 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
NKX2-1P43699 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC11.71□□□□□ -0.54
NKX2-1P43699 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC11.71□□□□□ -0.54
NKX2-1P43699 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
NKX2-1P43699 DLG4-203ENST00000399510 3975 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
NKX2-1P43699 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC060814.4-201ENST00000594169 2163 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 PCGF2-202ENST00000611883 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 CCDC57-202ENST00000389641 3000 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 CCDC57-206ENST00000392347 3000 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 MSNP1-201ENST00000511640 1732 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 RPF1-202ENST00000370656 724 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
NKX2-1P43699 PNMT-202ENST00000394246 821 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 MIR943-201ENST00000401286 94 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 SOCS2P1-201ENST00000417727 557 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC241585.1-201ENST00000433527 519 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 MESTP3-201ENST00000503460 968 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC097493.3-201ENST00000509725 367 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 AC104596.2-201ENST00000512793 793 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 IGHV3-42-201ENST00000520410 361 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC11.7□□□□□ -0.54
NKX2-1P43699 RPL28-205ENST00000558131 444 ntTSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC11.7□□□□□ -0.54
NKX2-1P43699 RRP7BP-205ENST00000566851 833 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 JPT2-214ENST00000569765 782 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.7□□□□□ -0.54
NKX2-1P43699 GPALPP1-207ENST00000611650 899 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC11.7□□□□□ -0.54
NKX2-1P43699 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 LDB3-205ENST00000429277 5436 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 AC115284.2-201ENST00000624646 2054 ntBASIC11.7□□□□□ -0.54
NKX2-1P43699 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 PIK3AP1-201ENST00000339364 4803 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 CCNY-203ENST00000374704 3960 ntAPPRIS P4 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
NKX2-1P43699 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC11.7□□□□□ -0.54
NKX2-1P43699 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC11.7□□□□□ -0.54
NKX2-1P43699 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
NKX2-1P43699 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
NKX2-1P43699 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
NKX2-1P43699 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
NKX2-1P43699 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 USP39-207ENST00000450066 2086 ntTSL 2 BASIC11.69□□□□□ -0.54
NKX2-1P43699 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC11.69□□□□□ -0.54
NKX2-1P43699 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
NKX2-1P43699 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC11.69□□□□□ -0.54
NKX2-1P43699 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms