Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCNAP12004 LAMB1-201ENST00000222399 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCNAP12004 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCNAP12004 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
PCNAP12004 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC13.95□□□□□ -0.18
PCNAP12004 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
PCNAP12004 MIR193BHG-211ENST00000641433 5365 ntBASIC13.95□□□□□ -0.18
PCNAP12004 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.95□□□□□ -0.18
PCNAP12004 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 ACADM-202ENST00000370841 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 KLF2P1-201ENST00000447438 1042 ntBASIC13.94□□□□□ -0.18
PCNAP12004 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.94□□□□□ -0.18
PCNAP12004 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 AC119751.2-201ENST00000504529 210 ntBASIC13.94□□□□□ -0.18
PCNAP12004 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.94□□□□□ -0.18
PCNAP12004 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 AC005962.1-201ENST00000584100 773 ntBASIC13.94□□□□□ -0.18
PCNAP12004 AC009884.2-201ENST00000603110 324 ntBASIC13.94□□□□□ -0.18
PCNAP12004 AC104506.1-201ENST00000609247 429 ntBASIC13.94□□□□□ -0.18
PCNAP12004 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 AL157996.1-201ENST00000624684 2299 ntBASIC13.94□□□□□ -0.18
PCNAP12004 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 DDC-213ENST00000617822 1809 ntTSL 3 BASIC13.94□□□□□ -0.18
PCNAP12004 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
PCNAP12004 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.94□□□□□ -0.18
PCNAP12004 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
PCNAP12004 NUTM2HP-201ENST00000442076 2498 ntBASIC13.93□□□□□ -0.18
PCNAP12004 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
PCNAP12004 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC13.93□□□□□ -0.18
PCNAP12004 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
PCNAP12004 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
PCNAP12004 MAP3K4-203ENST00000366920 5445 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
PCNAP12004 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 FP325330.2-201ENST00000624219 5630 ntBASIC13.93□□□□□ -0.18
PCNAP12004 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.93□□□□□ -0.18
PCNAP12004 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC13.93□□□□□ -0.18
PCNAP12004 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
PCNAP12004 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.93□□□□□ -0.18
PCNAP12004 HNRNPA1P36-201ENST00000521313 955 ntBASIC13.93□□□□□ -0.18
PCNAP12004 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.93□□□□□ -0.18
PCNAP12004 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.93□□□□□ -0.18
PCNAP12004 DUX4L45-201ENST00000566406 1057 ntBASIC13.93□□□□□ -0.18
PCNAP12004 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC13.93□□□□□ -0.18
PCNAP12004 MIR4783-201ENST00000580343 82 ntBASIC13.93□□□□□ -0.18
PCNAP12004 MIR4259-201ENST00000584466 101 ntBASIC13.93□□□□□ -0.18
PCNAP12004 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms