Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 CHCHD2P6-201ENST00000454346 447 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 GOLGA2P10-201ENST00000550961 817 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 RNF4-216ENST00000511859 1373 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AC089987.1-201ENST00000551654 2209 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 LINC01494-201ENST00000419511 1011 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 PGK1P2-201ENST00000431702 1214 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 RAB11B-205ENST00000601897 577 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AC008622.3-201ENST00000621170 600 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 PRORSD1P-202ENST00000563365 2154 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 IGHV1OR15-9-201ENST00000338912 353 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 HERC2P5-202ENST00000564458 1164 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 HERC2P8-203ENST00000564795 1164 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AC009132.1-201ENST00000565194 320 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 MED11-203ENST00000575284 652 ntTSL 3 BASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AC136475.7-201ENST00000602949 592 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 AIRN-201ENST00000601203 4374 ntBASIC13.57□□□□□ -0.24
VPS13AQ96RL7 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 AL354702.1-201ENST00000442006 1960 ntBASIC13.56□□□□□ -0.24
VPS13AQ96RL7 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 RUSC1-AS1-202ENST00000446880 1836 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 TCAF2P1-201ENST00000291129 2421 ntBASIC13.56□□□□□ -0.24
VPS13AQ96RL7 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 HAX1-201ENST00000328703 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 DPPA5-201ENST00000370370 679 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 RN7SL22P-201ENST00000471800 269 ntBASIC13.56□□□□□ -0.24
VPS13AQ96RL7 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 AC005586.2-201ENST00000563946 837 ntBASIC13.56□□□□□ -0.24
VPS13AQ96RL7 AC116631.1-201ENST00000640685 576 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 SDCBP2P1-201ENST00000416115 614 ntBASIC13.56□□□□□ -0.24
VPS13AQ96RL7 ATP5G1P7-201ENST00000444398 400 ntBASIC13.56□□□□□ -0.24
VPS13AQ96RL7 PCTP-206ENST00000573500 919 ntTSL 3 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 AC005562.1-201ENST00000583030 3219 ntBASIC13.56□□□□□ -0.24
VPS13AQ96RL7 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
VPS13AQ96RL7 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 NLK-203ENST00000582037 1503 ntTSL 2 BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
VPS13AQ96RL7 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms