Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HDAC4P56524 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.89□□□□□ -0.03
HDAC4P56524 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 CICP17-201ENST00000418553 2377 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HDAC4P56524 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HDAC4P56524 SHMT1P1-201ENST00000419974 1312 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.89□□□□□ -0.03
HDAC4P56524 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC14.89□□□□□ -0.03
HDAC4P56524 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC14.88□□□□□ -0.03
HDAC4P56524 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.88□□□□□ -0.03
HDAC4P56524 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.88□□□□□ -0.03
HDAC4P56524 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 RN7SKP214-201ENST00000364208 315 ntBASIC14.88□□□□□ -0.03
HDAC4P56524 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.88□□□□□ -0.03
HDAC4P56524 AP001258.2-201ENST00000529891 490 ntBASIC14.88□□□□□ -0.03
HDAC4P56524 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.88□□□□□ -0.03
HDAC4P56524 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 AC138649.2-201ENST00000615886 705 ntBASIC14.88□□□□□ -0.03
HDAC4P56524 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
HDAC4P56524 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.88□□□□□ -0.03
HDAC4P56524 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
HDAC4P56524 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HDAC4P56524 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.88□□□□□ -0.03
HDAC4P56524 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 KRT8P21-201ENST00000430398 1491 ntBASIC14.88□□□□□ -0.03
HDAC4P56524 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC14.88□□□□□ -0.03
HDAC4P56524 LINC01165-201ENST00000445190 1623 ntBASIC14.88□□□□□ -0.03
HDAC4P56524 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.88□□□□□ -0.03
HDAC4P56524 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HDAC4P56524 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.87□□□□□ -0.03
HDAC4P56524 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.87□□□□□ -0.03
HDAC4P56524 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.87□□□□□ -0.03
HDAC4P56524 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 RN7SL277P-201ENST00000481521 288 ntBASIC14.87□□□□□ -0.03
HDAC4P56524 PACS1-203ENST00000524815 628 ntTSL 4 BASIC14.87□□□□□ -0.03
HDAC4P56524 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.87□□□□□ -0.03
HDAC4P56524 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC14.87□□□□□ -0.03
HDAC4P56524 MIR3188-201ENST00000583494 85 ntBASIC14.87□□□□□ -0.03
HDAC4P56524 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC14.87□□□□□ -0.03
HDAC4P56524 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HDAC4P56524 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms