Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
CIITAP33076 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.91■□□□□ 0.14
CIITAP33076 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.91■□□□□ 0.14
CIITAP33076 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC15.91■□□□□ 0.14
CIITAP33076 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 SCARNA12-201ENST00000459155 270 ntBASIC15.91■□□□□ 0.14
CIITAP33076 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CIITAP33076 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.91■□□□□ 0.14
CIITAP33076 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC15.91■□□□□ 0.14
CIITAP33076 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.91■□□□□ 0.14
CIITAP33076 AC145285.5-201ENST00000562217 361 ntBASIC15.91■□□□□ 0.14
CIITAP33076 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC15.91■□□□□ 0.14
CIITAP33076 KRT18P8-201ENST00000581937 1246 ntBASIC15.91■□□□□ 0.14
CIITAP33076 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC15.91■□□□□ 0.14
CIITAP33076 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 AC138761.6-201ENST00000583997 1423 ntBASIC15.91■□□□□ 0.14
CIITAP33076 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.91■□□□□ 0.14
CIITAP33076 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
CIITAP33076 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
CIITAP33076 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 AC074138.1-201ENST00000611182 1303 ntBASIC15.91■□□□□ 0.14
CIITAP33076 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC15.91■□□□□ 0.14
CIITAP33076 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
CIITAP33076 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
CIITAP33076 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
CIITAP33076 AC117489.1-201ENST00000625169 3217 ntBASIC15.9■□□□□ 0.14
CIITAP33076 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC15.9■□□□□ 0.14
CIITAP33076 MPV17-204ENST00000399052 749 ntTSL 4 BASIC15.9■□□□□ 0.14
CIITAP33076 GUSBP10-201ENST00000417412 665 ntBASIC15.9■□□□□ 0.14
CIITAP33076 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC15.9■□□□□ 0.14
CIITAP33076 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CIITAP33076 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.9■□□□□ 0.14
CIITAP33076 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC15.9■□□□□ 0.14
CIITAP33076 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.9■□□□□ 0.14
CIITAP33076 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.9■□□□□ 0.14
CIITAP33076 ERP29P1-201ENST00000442902 706 ntBASIC15.9■□□□□ 0.14
CIITAP33076 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC15.9■□□□□ 0.14
CIITAP33076 CD81-209ENST00000492627 886 ntTSL 3 BASIC15.9■□□□□ 0.14
CIITAP33076 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 AC138701.2-201ENST00000553634 226 ntBASIC15.9■□□□□ 0.14
CIITAP33076 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.9■□□□□ 0.14
CIITAP33076 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.9■□□□□ 0.14
CIITAP33076 MIR4265-201ENST00000582152 99 ntBASIC15.9■□□□□ 0.14
CIITAP33076 AC010422.5-201ENST00000597961 585 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
CIITAP33076 HPX-213ENST00000615166 826 ntTSL 5 BASIC15.9■□□□□ 0.14
CIITAP33076 AC242376.2-201ENST00000619355 883 ntBASIC15.9■□□□□ 0.14
CIITAP33076 YRDCP1-201ENST00000621419 643 ntBASIC15.9■□□□□ 0.14
CIITAP33076 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC15.9■□□□□ 0.14
CIITAP33076 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.9■□□□□ 0.14
CIITAP33076 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CIITAP33076 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
CIITAP33076 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC15.89■□□□□ 0.14
CIITAP33076 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.89■□□□□ 0.13
CIITAP33076 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 AC097376.2-205ENST00000610159 5334 ntBASIC15.89■□□□□ 0.13
CIITAP33076 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CIITAP33076 AL365209.1-201ENST00000624418 6473 ntBASIC15.89■□□□□ 0.13
CIITAP33076 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CIITAP33076 PYY2-201ENST00000315776 282 ntBASIC15.89■□□□□ 0.13
CIITAP33076 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC15.89■□□□□ 0.13
CIITAP33076 AP000356.3-201ENST00000382243 753 ntBASIC15.89■□□□□ 0.13
CIITAP33076 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
CIITAP33076 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CIITAP33076 NME4-203ENST00000397722 1232 ntTSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 NOC2LP1-201ENST00000450578 752 ntBASIC15.89■□□□□ 0.13
CIITAP33076 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC15.89■□□□□ 0.13
CIITAP33076 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CIITAP33076 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms