Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL5A3P25940 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL5A3P25940 MKRN7P-201ENST00000433469 1371 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 ZNF33A-205ENST00000469037 1530 ntTSL 5 BASIC17.15■□□□□ 0.34
COL5A3P25940 MARK2P9-201ENST00000430958 1727 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 STK25-235ENST00000543554 2556 ntTSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 SRP9P1-201ENST00000445874 261 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 DUX4L31-201ENST00000446466 1136 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 TULP3P1-202ENST00000453253 1291 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 AC104115.1-201ENST00000484005 623 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 FAM86JP-202ENST00000484500 988 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 SPRY4-AS1-206ENST00000515288 539 ntTSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 AC090820.1-201ENST00000519722 591 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC17.15■□□□□ 0.34
COL5A3P25940 AC136475.7-201ENST00000602949 592 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 AC009812.1-201ENST00000605948 1059 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 COG6-212ENST00000630730 186 ntTSL 5 BASIC17.15■□□□□ 0.34
COL5A3P25940 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL5A3P25940 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.15■□□□□ 0.34
COL5A3P25940 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
COL5A3P25940 NRROS-201ENST00000328557 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 LINC00552-201ENST00000625151 2579 ntBASIC17.15■□□□□ 0.34
COL5A3P25940 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL5A3P25940 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL5A3P25940 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
COL5A3P25940 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
COL5A3P25940 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC17.14■□□□□ 0.33
COL5A3P25940 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 RANGRF-201ENST00000226105 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 MARCKSL1P2-201ENST00000401037 976 ntBASIC17.14■□□□□ 0.33
COL5A3P25940 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC17.14■□□□□ 0.33
COL5A3P25940 AC105443.1-201ENST00000433754 712 ntBASIC17.14■□□□□ 0.33
COL5A3P25940 AC092865.2-201ENST00000439409 971 ntBASIC17.14■□□□□ 0.33
COL5A3P25940 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
COL5A3P25940 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 TSPAN9-IT1-201ENST00000539784 562 ntTSL 4 BASIC17.14■□□□□ 0.33
COL5A3P25940 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC17.14■□□□□ 0.33
COL5A3P25940 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC17.14■□□□□ 0.33
COL5A3P25940 AC006262.2-202ENST00000600152 333 ntTSL 2 BASIC17.14■□□□□ 0.33
COL5A3P25940 AL353622.2-201ENST00000605846 425 ntBASIC17.14■□□□□ 0.33
COL5A3P25940 NF1P11-201ENST00000621292 1282 ntBASIC17.14■□□□□ 0.33
COL5A3P25940 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 CCDC175-201ENST00000281581 2487 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
COL5A3P25940 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC17.14■□□□□ 0.33
COL5A3P25940 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL5A3P25940 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 AC027601.5-201ENST00000624065 2482 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 AC026271.1-201ENST00000447794 1348 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 WDR54-202ENST00000409791 854 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A3P25940 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC17.13■□□□□ 0.33
COL5A3P25940 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC17.13■□□□□ 0.33
COL5A3P25940 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC17.13■□□□□ 0.33
COL5A3P25940 AP001120.3-201ENST00000585729 489 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 MFSD12-215ENST00000615613 688 ntBASIC17.13■□□□□ 0.33
COL5A3P25940 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
COL5A3P25940 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.13■□□□□ 0.33
COL5A3P25940 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms