Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 HR-201ENST00000312841 5351 ntTSL 5 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 FKBP4P1-201ENST00000507284 1347 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 RN7SKP255-201ENST00000363442 313 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 RN7SKP203-201ENST00000363618 332 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 RN7SKP71-201ENST00000364558 318 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 7SK.1-201ENST00000365328 331 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 SOD1-202ENST00000389995 865 ntTSL 3 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 IL6RP1-201ENST00000417848 1273 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 AL138885.2-201ENST00000420389 539 ntTSL 3 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 ATP5G1P7-201ENST00000444398 400 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 AK2-208ENST00000487289 920 ntTSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 PIGCP1-201ENST00000527583 895 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 IGHV1OR16-3-201ENST00000568138 205 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 TIMM23-201ENST00000580018 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 DSCR9-203ENST00000581640 472 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 AC100788.1-201ENST00000591108 945 ntTSL 5 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 AL033381.2-201ENST00000603854 732 ntBASIC22.53■■□□□ 1.2
IFT140Q96RY7 TNNI2-206ENST00000617947 699 ntAPPRIS ALT1 TSL 5 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 ZCCHC9-203ENST00000407610 1555 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
IFT140Q96RY7 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
IFT140Q96RY7 AP000787.1-205ENST00000536683 1485 ntTSL 5 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
IFT140Q96RY7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
IFT140Q96RY7 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
IFT140Q96RY7 USP8-219ENST00000625664 1568 ntTSL 5 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 AC116347.1-201ENST00000442824 720 ntBASIC22.52■■□□□ 1.2
IFT140Q96RY7 PGAM5-202ENST00000454808 1084 ntTSL 3 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 AP002852.2-202ENST00000523572 592 ntTSL 4 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 SLC25A3-212ENST00000549338 1285 ntAPPRIS ALT1 TSL 3 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 AC090825.2-201ENST00000557959 739 ntBASIC22.52■■□□□ 1.2
IFT140Q96RY7 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 RN7SL5P-201ENST00000581458 321 ntBASIC22.52■■□□□ 1.2
IFT140Q96RY7 PDLIM1P1-201ENST00000604187 969 ntBASIC22.52■■□□□ 1.2
IFT140Q96RY7 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
IFT140Q96RY7 AL157832.2-205ENST00000597245 1649 ntBASIC22.52■■□□□ 1.2
IFT140Q96RY7 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
IFT140Q96RY7 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 GGPS1-203ENST00000391855 1407 ntTSL 2 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 VWA3B-221ENST00000614454 1542 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 OR6M1-201ENST00000309154 1053 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 GSTM2P1-201ENST00000405166 654 ntBASIC22.51■■□□□ 1.19
IFT140Q96RY7 AL512422.2-201ENST00000426453 551 ntTSL 2 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 CTLA4-203ENST00000427473 969 ntTSL 5 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 AC007622.1-201ENST00000488371 535 ntBASIC22.51■■□□□ 1.19
IFT140Q96RY7 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 AC108102.1-201ENST00000606528 548 ntTSL 3 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 MIR6871-201ENST00000613433 56 ntBASIC22.51■■□□□ 1.19
IFT140Q96RY7 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 PSAT1-201ENST00000347159 1411 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
IFT140Q96RY7 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
IFT140Q96RY7 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
IFT140Q96RY7 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC22.5■■□□□ 1.19
IFT140Q96RY7 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC22.5■■□□□ 1.19
IFT140Q96RY7 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC22.5■■□□□ 1.19
IFT140Q96RY7 GOSR1-205ENST00000467337 1011 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
IFT140Q96RY7 RPL30P11-202ENST00000509114 358 ntTSL 3 BASIC22.5■■□□□ 1.19
IFT140Q96RY7 FP325317.1-201ENST00000539936 1042 ntBASIC22.5■■□□□ 1.19
IFT140Q96RY7 AC063924.1-201ENST00000546680 673 ntBASIC22.5■■□□□ 1.19
IFT140Q96RY7 GMEB1-201ENST00000294409 1912 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
IFT140Q96RY7 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC22.5■■□□□ 1.19
IFT140Q96RY7 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms