Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 EEF1GP8-201ENST00000506566 1154 ntBASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 GOLGA2P7-209ENST00000560408 745 ntBASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 LINC00552-201ENST00000625151 2579 ntBASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.07
NPAS3Q8IXF0 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.07
NPAS3Q8IXF0 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 CICP14-201ENST00000629111 2732 ntBASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 FOXN3-AS2-201ENST00000554071 1262 ntBASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
NPAS3Q8IXF0 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.63□□□□□ -0.07
NPAS3Q8IXF0 SURF4-203ENST00000371991 715 ntTSL 3 BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms