Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC12.79□□□□□ -0.36
CLRN1P58418 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC12.79□□□□□ -0.36
CLRN1P58418 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC12.79□□□□□ -0.36
CLRN1P58418 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.79□□□□□ -0.36
CLRN1P58418 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC12.78□□□□□ -0.36
CLRN1P58418 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CLRN1P58418 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 CCT8L1P-201ENST00000465400 1674 ntBASIC12.78□□□□□ -0.36
CLRN1P58418 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CLRN1P58418 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC12.78□□□□□ -0.36
CLRN1P58418 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC12.78□□□□□ -0.36
CLRN1P58418 MIR663B-201ENST00000408361 115 ntBASIC12.78□□□□□ -0.36
CLRN1P58418 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 RPL18P13-201ENST00000478088 569 ntBASIC12.78□□□□□ -0.36
CLRN1P58418 TMEM198B-204ENST00000484016 896 ntBASIC12.78□□□□□ -0.36
CLRN1P58418 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 SCARNA21-201ENST00000517026 139 ntBASIC12.78□□□□□ -0.36
CLRN1P58418 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC12.78□□□□□ -0.36
CLRN1P58418 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC12.78□□□□□ -0.36
CLRN1P58418 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 NAA38-206ENST00000576384 424 ntTSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 AC007663.3-201ENST00000609632 465 ntBASIC12.78□□□□□ -0.36
CLRN1P58418 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC12.78□□□□□ -0.36
CLRN1P58418 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CLRN1P58418 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CLRN1P58418 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC12.78□□□□□ -0.36
CLRN1P58418 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.78□□□□□ -0.36
CLRN1P58418 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
CLRN1P58418 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC12.77□□□□□ -0.36
CLRN1P58418 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 CACNA1G-225ENST00000512389 6837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 AC018629.1-201ENST00000623381 1736 ntBASIC12.77□□□□□ -0.36
CLRN1P58418 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC12.77□□□□□ -0.36
CLRN1P58418 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.36
CLRN1P58418 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CLRN1P58418 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CLRN1P58418 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CLRN1P58418 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CLRN1P58418 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CLRN1P58418 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
CLRN1P58418 AC106794.1-201ENST00000506935 792 ntBASIC12.77□□□□□ -0.37
CLRN1P58418 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC12.77□□□□□ -0.37
CLRN1P58418 AC003686.1-201ENST00000550956 1034 ntBASIC12.77□□□□□ -0.37
CLRN1P58418 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC12.77□□□□□ -0.37
CLRN1P58418 ARL16-210ENST00000574938 751 ntTSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 AC104982.3-201ENST00000581995 514 ntBASIC12.77□□□□□ -0.37
CLRN1P58418 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 KLK3-211ENST00000597483 810 ntTSL 2 BASIC12.77□□□□□ -0.37
CLRN1P58418 BAP1-211ENST00000615113 489 ntBASIC12.77□□□□□ -0.37
CLRN1P58418 AL136295.7-201ENST00000619226 1200 ntBASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms