Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HDAC4P56524 AC073869.1-201ENST00000415574 2762 ntBASIC14.91□□□□□ -0.02
HDAC4P56524 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.91□□□□□ -0.02
HDAC4P56524 LINC00115-201ENST00000473798 1317 ntBASIC14.91□□□□□ -0.02
HDAC4P56524 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HDAC4P56524 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC4P56524 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC4P56524 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC14.9□□□□□ -0.02
HDAC4P56524 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC14.9□□□□□ -0.02
HDAC4P56524 AC016700.1-201ENST00000429424 312 ntBASIC14.9□□□□□ -0.02
HDAC4P56524 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.9□□□□□ -0.02
HDAC4P56524 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC14.9□□□□□ -0.02
HDAC4P56524 MIR3615-201ENST00000581999 87 ntBASIC14.9□□□□□ -0.02
HDAC4P56524 AL645939.5-201ENST00000606834 243 ntBASIC14.9□□□□□ -0.02
HDAC4P56524 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HDAC4P56524 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HDAC4P56524 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
HDAC4P56524 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HDAC4P56524 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC14.9□□□□□ -0.02
HDAC4P56524 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.89□□□□□ -0.03
HDAC4P56524 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.89□□□□□ -0.03
HDAC4P56524 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
HDAC4P56524 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 AC103592.1-201ENST00000394513 664 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC14.89□□□□□ -0.03
HDAC4P56524 TSPY25P-201ENST00000429463 745 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.89□□□□□ -0.03
HDAC4P56524 AC091804.1-201ENST00000486888 567 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.89□□□□□ -0.03
HDAC4P56524 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.89□□□□□ -0.03
HDAC4P56524 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC14.89□□□□□ -0.03
HDAC4P56524 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC14.89□□□□□ -0.03
HDAC4P56524 AC243960.2-201ENST00000600996 747 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 AC026740.1-201ENST00000607068 791 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC14.89□□□□□ -0.03
HDAC4P56524 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HDAC4P56524 LINC01815-202ENST00000641468 1409 ntBASIC14.89□□□□□ -0.03
HDAC4P56524 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms