Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 STAT3-203ENST00000404395 2633 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
MSX2P35548 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX2P35548 SNX1-201ENST00000261889 3373 ntTSL 2 BASIC13.65□□□□□ -0.23
MSX2P35548 AC134772.2-202ENST00000634384 3585 ntTSL 2 BASIC13.65□□□□□ -0.23
MSX2P35548 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
MSX2P35548 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 GRIN1-205ENST00000371555 4003 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 PPP1R26P2-201ENST00000611403 3595 ntBASIC13.64□□□□□ -0.23
MSX2P35548 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 AC022144.1-201ENST00000602255 1580 ntBASIC13.64□□□□□ -0.23
MSX2P35548 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 SOCS2P1-201ENST00000417727 557 ntBASIC13.64□□□□□ -0.23
MSX2P35548 POM121L8P-201ENST00000417732 1281 ntBASIC13.64□□□□□ -0.23
MSX2P35548 POM121L9P-203ENST00000441984 1285 ntBASIC13.64□□□□□ -0.23
MSX2P35548 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.64□□□□□ -0.23
MSX2P35548 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC13.64□□□□□ -0.23
MSX2P35548 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC13.64□□□□□ -0.23
MSX2P35548 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.64□□□□□ -0.23
MSX2P35548 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.64□□□□□ -0.23
MSX2P35548 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 AC138466.3-201ENST00000619983 221 ntBASIC13.64□□□□□ -0.23
MSX2P35548 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 TLE3-220ENST00000559929 3408 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 TRAIP-201ENST00000331456 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
MSX2P35548 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.64□□□□□ -0.23
MSX2P35548 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MSX2P35548 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC13.64□□□□□ -0.23
MSX2P35548 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.63□□□□□ -0.23
MSX2P35548 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
MSX2P35548 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 H1FX-AS1-201ENST00000383461 2600 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC13.63□□□□□ -0.23
MSX2P35548 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.63□□□□□ -0.23
MSX2P35548 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
MSX2P35548 AC106818.1-201ENST00000623223 3242 ntBASIC13.63□□□□□ -0.23
MSX2P35548 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MSX2P35548 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms