Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC092687.3-201ENST00000606907 393 ntTSL 5 BASIC16.18■□□□□ 0.18
SCN4AP35499 AL158032.2-201ENST00000616818 195 ntBASIC16.18■□□□□ 0.18
SCN4AP35499 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 SUCLG2-203ENST00000492795 1512 ntTSL 2 BASIC16.18■□□□□ 0.18
SCN4AP35499 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC16.18■□□□□ 0.18
SCN4AP35499 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
SCN4AP35499 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.18■□□□□ 0.18
SCN4AP35499 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
SCN4AP35499 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.17■□□□□ 0.18
SCN4AP35499 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 HNRNPA1P59-201ENST00000430583 918 ntBASIC16.17■□□□□ 0.18
SCN4AP35499 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SCN4AP35499 HAX1-211ENST00000532105 771 ntTSL 3 BASIC16.17■□□□□ 0.18
SCN4AP35499 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC16.17■□□□□ 0.18
SCN4AP35499 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 SLC50A1-214ENST00000622581 1245 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 RCC2P1-201ENST00000452257 1476 ntBASIC16.17■□□□□ 0.18
SCN4AP35499 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 AC245140.2-201ENST00000624054 1939 ntBASIC16.17■□□□□ 0.18
SCN4AP35499 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SCN4AP35499 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC16.17■□□□□ 0.18
SCN4AP35499 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC16.17■□□□□ 0.18
SCN4AP35499 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC16.17■□□□□ 0.18
SCN4AP35499 AL590094.1-206ENST00000635959 478 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 AL590094.1-209ENST00000637260 499 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 PAX6-247ENST00000638965 979 ntTSL 5 BASIC16.17■□□□□ 0.18
SCN4AP35499 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC16.17■□□□□ 0.18
SCN4AP35499 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 BX640514.1-201ENST00000583223 1918 ntBASIC16.16■□□□□ 0.18
SCN4AP35499 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC16.16■□□□□ 0.18
SCN4AP35499 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 AC024475.2-201ENST00000312173 879 ntBASIC16.16■□□□□ 0.18
SCN4AP35499 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC16.16■□□□□ 0.18
SCN4AP35499 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 SERF2-205ENST00000403425 690 ntTSL 2 BASIC16.16■□□□□ 0.18
SCN4AP35499 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC16.16■□□□□ 0.18
SCN4AP35499 AC069257.3-201ENST00000431391 708 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 OR52X1P-201ENST00000446117 914 ntBASIC16.16■□□□□ 0.18
SCN4AP35499 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC16.16■□□□□ 0.18
SCN4AP35499 MIR4526-201ENST00000583168 87 ntBASIC16.16■□□□□ 0.18
SCN4AP35499 SOX2-OT-228ENST00000597828 864 ntTSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC16.16■□□□□ 0.18
SCN4AP35499 AP000553.2-201ENST00000609038 441 ntBASIC16.16■□□□□ 0.18
SCN4AP35499 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.16■□□□□ 0.18
SCN4AP35499 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC16.16■□□□□ 0.18
SCN4AP35499 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
SCN4AP35499 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SCN4AP35499 GOLGA8G-203ENST00000525590 2009 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 GOLGA8F-202ENST00000532622 2009 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SCN4AP35499 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.16■□□□□ 0.18
SCN4AP35499 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms