Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC22.57■■□□□ 1.2
IFT140Q96RY7 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 CRYGD-201ENST00000264376 619 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 VAMP2-203ENST00000481878 557 ntAPPRIS ALT1 TSL 2 BASIC22.57■■□□□ 1.2
IFT140Q96RY7 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC22.57■■□□□ 1.2
IFT140Q96RY7 TMEM241-208ENST00000542162 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC22.57■■□□□ 1.2
IFT140Q96RY7 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC22.57■■□□□ 1.2
IFT140Q96RY7 AC117500.5-201ENST00000623233 527 ntBASIC22.57■■□□□ 1.2
IFT140Q96RY7 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
IFT140Q96RY7 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
IFT140Q96RY7 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 HNRNPA1P68-201ENST00000425806 979 ntBASIC22.56■■□□□ 1.2
IFT140Q96RY7 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 COL18A1-AS2-201ENST00000446475 552 ntTSL 4 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 TBC1D8B-202ENST00000310452 2589 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC22.56■■□□□ 1.2
IFT140Q96RY7 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
IFT140Q96RY7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 SNAP25-AS1-202ENST00000426491 804 ntTSL 5 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 BICD1P1-201ENST00000457832 1222 ntBASIC22.55■■□□□ 1.2
IFT140Q96RY7 FPGT-205ENST00000482102 561 ntTSL 4 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 TLE2-205ENST00000586422 389 ntTSL 5 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 ACE-204ENST00000428043 5120 ntTSL 2 BASIC22.55■■□□□ 1.2
IFT140Q96RY7 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
IFT140Q96RY7 AC012485.1-201ENST00000456601 2509 ntTSL 2 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 FMO6P-201ENST00000236166 1620 ntBASIC22.54■■□□□ 1.2
IFT140Q96RY7 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 SNORD23-201ENST00000408876 110 ntBASIC22.54■■□□□ 1.2
IFT140Q96RY7 OR2A1-AS1-203ENST00000468575 568 ntBASIC22.54■■□□□ 1.2
IFT140Q96RY7 CXXC1P1-202ENST00000489409 1212 ntBASIC22.54■■□□□ 1.2
IFT140Q96RY7 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 AL161937.2-201ENST00000615503 403 ntTSL 2 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
IFT140Q96RY7 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 AC124944.3-201ENST00000607976 1304 ntBASIC22.54■■□□□ 1.2
IFT140Q96RY7 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
IFT140Q96RY7 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
IFT140Q96RY7 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
IFT140Q96RY7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
IFT140Q96RY7 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
IFT140Q96RY7 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 FCRLA-202ENST00000294796 766 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
IFT140Q96RY7 RNA5SP407-201ENST00000410275 110 ntBASIC22.54■■□□□ 1.2
IFT140Q96RY7 PHBP3-201ENST00000412562 819 ntBASIC22.54■■□□□ 1.2
IFT140Q96RY7 SMUG1-213ENST00000506595 712 ntTSL 5 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 BACE1-207ENST00000510630 1236 ntTSL 2 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC22.54■■□□□ 1.2
IFT140Q96RY7 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
IFT140Q96RY7 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
IFT140Q96RY7 HSPA7-201ENST00000445535 1927 ntBASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms