Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 PIAS1-202ENST00000545237 2932 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 SNX21-203ENST00000372541 771 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.24■□□□□ 0.19
ERCC4Q92889 C2orf27AP3-201ENST00000434123 579 ntBASIC16.24■□□□□ 0.19
ERCC4Q92889 AC007389.4-201ENST00000454674 793 ntBASIC16.24■□□□□ 0.19
ERCC4Q92889 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.24■□□□□ 0.19
ERCC4Q92889 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.24■□□□□ 0.19
ERCC4Q92889 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.24■□□□□ 0.19
ERCC4Q92889 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
ERCC4Q92889 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.24■□□□□ 0.19
ERCC4Q92889 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 AL354718.3-201ENST00000616414 581 ntBASIC16.24■□□□□ 0.19
ERCC4Q92889 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 CR382287.1-201ENST00000623954 586 ntBASIC16.24■□□□□ 0.19
ERCC4Q92889 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 E2F3P2-201ENST00000447755 1422 ntBASIC16.24■□□□□ 0.19
ERCC4Q92889 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
ERCC4Q92889 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.24■□□□□ 0.19
ERCC4Q92889 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC16.24■□□□□ 0.19
ERCC4Q92889 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC16.23■□□□□ 0.19
ERCC4Q92889 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
ERCC4Q92889 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 CCDC142-202ENST00000393965 3406 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC16.23■□□□□ 0.19
ERCC4Q92889 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
ERCC4Q92889 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 MIR1202-201ENST00000408529 83 ntBASIC16.23■□□□□ 0.19
ERCC4Q92889 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.23■□□□□ 0.19
ERCC4Q92889 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.23■□□□□ 0.19
ERCC4Q92889 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC16.23■□□□□ 0.19
ERCC4Q92889 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.23■□□□□ 0.19
ERCC4Q92889 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.23■□□□□ 0.19
ERCC4Q92889 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.23■□□□□ 0.19
ERCC4Q92889 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
ERCC4Q92889 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.23■□□□□ 0.19
ERCC4Q92889 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 AC135782.3-201ENST00000562782 2105 ntBASIC16.23■□□□□ 0.19
ERCC4Q92889 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.23■□□□□ 0.19
ERCC4Q92889 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.23■□□□□ 0.19
ERCC4Q92889 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.23■□□□□ 0.19
ERCC4Q92889 AC025048.6-201ENST00000634326 1161 ntBASIC16.23■□□□□ 0.19
ERCC4Q92889 AC006453.4-201ENST00000636949 1252 ntBASIC16.23■□□□□ 0.19
ERCC4Q92889 AC125807.2-201ENST00000513358 3514 ntBASIC16.23■□□□□ 0.19
ERCC4Q92889 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC16.23■□□□□ 0.19
ERCC4Q92889 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ERCC4Q92889 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC16.22■□□□□ 0.19
ERCC4Q92889 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ERCC4Q92889 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms