Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZMYND11-201ENST00000309776 4228 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 B4GALT1-201ENST00000379731 4201 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 PISD-203ENST00000397500 2194 ntTSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 TIAM2-202ENST00000318981 5916 ntAPPRIS P1 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 RASAL1-203ENST00000446861 3040 ntAPPRIS ALT2 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 PASK-215ENST00000544142 4724 ntAPPRIS P3 TSL 5 BASIC8.78□□□□□ -1
LINC00643Q86TS7 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 MCM5-202ENST00000382011 2402 ntTSL 2 BASIC8.78□□□□□ -1
LINC00643Q86TS7 HTR2C-203ENST00000371951 3288 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 C2CD2-201ENST00000329623 5844 ntTSL 1 (best) BASIC8.78□□□□□ -1
LINC00643Q86TS7 ZNF839-209ENST00000559185 2905 ntAPPRIS ALT2 TSL 2 BASIC8.77□□□□□ -1
LINC00643Q86TS7 KDM5D-202ENST00000382806 5134 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1
LINC00643Q86TS7 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC8.77□□□□□ -1
LINC00643Q86TS7 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC8.77□□□□□ -1
LINC00643Q86TS7 CEP63-215ENST00000606977 2800 ntAPPRIS P3 TSL 5 BASIC8.77□□□□□ -1
LINC00643Q86TS7 MYH4-201ENST00000255381 6016 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1
LINC00643Q86TS7 TNPO2-210ENST00000588216 3056 ntAPPRIS ALT1 TSL 1 (best) BASIC8.77□□□□□ -1
LINC00643Q86TS7 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC8.77□□□□□ -1
LINC00643Q86TS7 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 RAB6A-201ENST00000310653 3389 ntAPPRIS P5 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 POLN-201ENST00000382865 2899 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 ZNF552-201ENST00000391701 2352 ntAPPRIS P1 TSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 LGALS9-203ENST00000395473 3114 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 DIO1-216ENST00000613679 1856 ntAPPRIS ALT1 TSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 AC243964.3-201ENST00000623022 2028 ntBASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TMPRSS3-201ENST00000291532 3193 ntAPPRIS P3 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 BRD1-203ENST00000404760 4550 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 EZR-203ENST00000392177 2933 ntAPPRIS ALT1 TSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TSPY14P-201ENST00000303979 915 ntBASIC8.77□□□□□ -1.01
LINC00643Q86TS7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 GUSBP6-202ENST00000438529 1198 ntBASIC8.77□□□□□ -1.01
LINC00643Q86TS7 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 AC015910.1-201ENST00000579400 975 ntBASIC8.77□□□□□ -1.01
LINC00643Q86TS7 MIR4515-201ENST00000584082 81 ntBASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TFIP11-204ENST00000407690 3586 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 GGTA1P-205ENST00000495328 3478 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 SNU13-203ENST00000401959 1670 ntAPPRIS P1 TSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 ARHGEF2-203ENST00000361247 4149 ntAPPRIS P4 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 CDH3-202ENST00000429102 3611 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 ZNF283-209ENST00000618787 5713 ntAPPRIS P1 TSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 ACSF3-218ENST00000614302 3751 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 LMX1A-202ENST00000342310 3545 ntAPPRIS P1 TSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 C12orf56-201ENST00000333722 3936 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 RNF24-201ENST00000336095 7453 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TIFAB-201ENST00000537858 5923 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 TLE4-201ENST00000265284 2382 ntTSL 2 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 RNF115-202ENST00000582693 9117 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 AL136982.4-201ENST00000437689 1740 ntBASIC8.77□□□□□ -1.01
LINC00643Q86TS7 LARGE1-202ENST00000397394 4138 ntAPPRIS P1 TSL 5 BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 CPT1B-203ENST00000395650 2662 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 PRAMEF27-201ENST00000436041 1863 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC8.77□□□□□ -1.01
LINC00643Q86TS7 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CLPB-201ENST00000294053 3240 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CTAGE7P-201ENST00000435712 2436 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CIZ1-225ENST00000538431 2996 ntAPPRIS ALT2 TSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 MTHFR-204ENST00000376590 7094 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 USP10-219ENST00000570191 2717 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 TNC-203ENST00000423613 6281 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 AC068896.1-201ENST00000494792 3422 ntAPPRIS P1 TSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 THUMPD1-201ENST00000381337 4122 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 INPP5D-204ENST00000445964 4845 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CPT1B-204ENST00000405237 2647 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 MTFR1L-201ENST00000374300 2053 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 WASF2-202ENST00000618852 5676 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 SPG11-201ENST00000261866 7774 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 MED24-203ENST00000394127 3456 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 GOLGA2P1-201ENST00000512938 2906 ntBASIC8.76□□□□□ -1.01
LINC00643Q86TS7 CHCHD7-201ENST00000303759 1684 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC8.76□□□□□ -1.01
LINC00643Q86TS7 WBP11-201ENST00000261167 4646 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms