RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 NISCHQ9Y2I1 1504 aa24.03■■□□□ 1.44
CDH3-202ENST00000429102 SHROOM4Q9ULL8 1493 aa21.99■■□□□ 1.11
CDH3-202ENST00000429102 SUPT5HO00267 1087 aaKnown RBP21.78■■□□□ 1.08
CDH3-202ENST00000429102 DCAF8L2P0C7V8 631 aa21.48■■□□□ 1.03
CDH3-202ENST00000429102 PCGF6Q9BYE7 350 aa20.91■□□□□ 0.94
CDH3-202ENST00000429102 CHIC1Q5VXU3 224 aa20.74■□□□□ 0.91
CDH3-202ENST00000429102 PPARGC1BQ86YN6 1023 aaKnown RBP20.72■□□□□ 0.91
CDH3-202ENST00000429102 LOC105371045A0A1W2PR82 267 aa20.61■□□□□ 0.89
CDH3-202ENST00000429102 HRCP23327 699 aa20.6■□□□□ 0.89
CDH3-202ENST00000429102 EHMT2Q96KQ7 1210 aa20.6■□□□□ 0.89
CDH3-202ENST00000429102 MYO15BQ96JP2 1530 aa20.58■□□□□ 0.89
CDH3-202ENST00000429102 FAM9AQ8IZU1 332 aaPredicted RBP20.32■□□□□ 0.84
CDH3-202ENST00000429102 ZCCHC6Q5VYS8 1495 aaKnown RBP20.24■□□□□ 0.83
CDH3-202ENST00000429102 TRIM26Q12899 539 aaPredicted RBP19.93■□□□□ 0.78
CDH3-202ENST00000429102 TRIM41Q8WV44 630 aa19.93■□□□□ 0.78
CDH3-202ENST00000429102 TTBK1Q5TCY1 1321 aaPredicted RBP19.9■□□□□ 0.78
CDH3-202ENST00000429102 CCDC180Q9P1Z9 1646 aa19.66■□□□□ 0.74
CDH3-202ENST00000429102 DCAF1Q9Y4B6 1507 aa19.63■□□□□ 0.73
CDH3-202ENST00000429102 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.56■□□□□ 0.72
CDH3-202ENST00000429102 CCER1Q8TC90 406 aaPredicted RBP19.45■□□□□ 0.7
CDH3-202ENST00000429102 ZEB1P37275 1124 aaPredicted RBP19.43■□□□□ 0.7
CDH3-202ENST00000429102 SCRIBQ14160 1630 aa19.41■□□□□ 0.7
CDH3-202ENST00000429102 SCAF1Q9H7N4 1312 aaKnown RBP19.39■□□□□ 0.69
CDH3-202ENST00000429102 RSF1Q96T23 1441 aaPredicted RBP19.38■□□□□ 0.69
CDH3-202ENST00000429102 RANGAP1P46060 587 aaPredicted RBP19.26■□□□□ 0.67
CDH3-202ENST00000429102 ABCC9O60706 1549 aa19.23■□□□□ 0.67
CDH3-202ENST00000429102 RB1CC1Q8TDY2 1594 aa19.2■□□□□ 0.66
CDH3-202ENST00000429102 YTHDC1Q96MU7 727 aaKnown RBP19.19■□□□□ 0.66
CDH3-202ENST00000429102 CECR2Q9BXF3 1484 aa19.15■□□□□ 0.66
CDH3-202ENST00000429102 UBTFP17480 764 aaKnown RBP19.13■□□□□ 0.65
CDH3-202ENST00000429102 NEUROD1Q13562 356 aa19.12■□□□□ 0.65
CDH3-202ENST00000429102 DIEXFQ68CQ4 756 aaKnown RBP19.08■□□□□ 0.64
CDH3-202ENST00000429102 GTF3C3Q9Y5Q9 886 aa19.04■□□□□ 0.64
CDH3-202ENST00000429102 HNRNPUL2Q1KMD3 747 aaKnown RBP19.02■□□□□ 0.64
CDH3-202ENST00000429102 ACIN1Q9UKV3 1341 aaKnown RBP18.97■□□□□ 0.63
CDH3-202ENST00000429102 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
CDH3-202ENST00000429102 PELP1Q8IZL8 1130 aaKnown RBP18.92■□□□□ 0.62
CDH3-202ENST00000429102 PABPN1Q86U42 306 aaKnown RBP eCLIP18.89■□□□□ 0.61
CDH3-202ENST00000429102 CENPBP07199 599 aaPredicted RBP18.88■□□□□ 0.61
CDH3-202ENST00000429102 WIZO95785 1651 aa18.8■□□□□ 0.6
CDH3-202ENST00000429102 ABCC8Q09428 1581 aa18.76■□□□□ 0.59
CDH3-202ENST00000429102 SOGA1O94964 1423 aa18.74■□□□□ 0.59
CDH3-202ENST00000429102 CSRNP3Q8WYN3 585 aa18.73■□□□□ 0.59
CDH3-202ENST00000429102 CCDC88BA6NC98 1476 aa18.72■□□□□ 0.59
CDH3-202ENST00000429102 APLP2Q06481 763 aa18.7■□□□□ 0.58
CDH3-202ENST00000429102 ZNF316A6NFI3 1004 aaPredicted RBP18.69■□□□□ 0.58
CDH3-202ENST00000429102 MIER1Q8N108 512 aa18.68■□□□□ 0.58
CDH3-202ENST00000429102 CEP162Q5TB80 1403 aa18.67■□□□□ 0.58
CDH3-202ENST00000429102 RUSC2Q8N2Y8 1516 aa18.64■□□□□ 0.58
CDH3-202ENST00000429102 ITGAEP38570 1179 aa18.61■□□□□ 0.57
CDH3-202ENST00000429102 NACADO15069 1562 aa18.43■□□□□ 0.54
CDH3-202ENST00000429102 TNIKQ9UKE5 1360 aa18.42■□□□□ 0.54
CDH3-202ENST00000429102 BAZ1AQ9NRL2 1556 aaPredicted RBP18.36■□□□□ 0.53
CDH3-202ENST00000429102 ATP1B4Q9UN42 357 aaPredicted RBP18.35■□□□□ 0.53
CDH3-202ENST00000429102 CLIP1P30622 1438 aa18.31■□□□□ 0.52
CDH3-202ENST00000429102 BCANQ96GW7 911 aa18.29■□□□□ 0.52
CDH3-202ENST00000429102 WRNQ14191 1432 aaPredicted RBP eCLIP18.28■□□□□ 0.52
CDH3-202ENST00000429102 GOLGA3Q08378 1498 aa18.26■□□□□ 0.51
CDH3-202ENST00000429102 KANK4Q5T7N3 995 aaPredicted RBP18.24■□□□□ 0.51
CDH3-202ENST00000429102 TOP2AP11388 1531 aaKnown RBP18.22■□□□□ 0.51
CDH3-202ENST00000429102 HIRIP3Q9BW71 556 aaPredicted RBP18.22■□□□□ 0.51
CDH3-202ENST00000429102 SMARCA2P51531 1590 aa18.21■□□□□ 0.51
CDH3-202ENST00000429102 KCNH8Q96L42 1107 aa18.18■□□□□ 0.5
CDH3-202ENST00000429102 P3H3Q8IVL6 736 aa18.16■□□□□ 0.5
CDH3-202ENST00000429102 SMARCA4P51532 1647 aa18.15■□□□□ 0.5
CDH3-202ENST00000429102 RAPGEF2Q9Y4G8 1499 aa18.14■□□□□ 0.49
CDH3-202ENST00000429102 EIF4G1Q04637 1599 aaKnown RBP18.1■□□□□ 0.49
CDH3-202ENST00000429102 EEA1Q15075 1411 aa18.1■□□□□ 0.49
CDH3-202ENST00000429102 FAM50AQ14320 339 aaKnown RBP18.08■□□□□ 0.49
CDH3-202ENST00000429102 CEP164Q9UPV0 1460 aa18.08■□□□□ 0.48
CDH3-202ENST00000429102 VPS8Q8N3P4 1428 aa18.05■□□□□ 0.48
CDH3-202ENST00000429102 DDX10Q13206 875 aaKnown RBP18.05■□□□□ 0.48
CDH3-202ENST00000429102 SUPT16HQ9Y5B9 1047 aaKnown RBP18.05■□□□□ 0.48
CDH3-202ENST00000429102 SIN3AQ96ST3 1273 aa18.02■□□□□ 0.47
CDH3-202ENST00000429102 SYNJ1O43426 1573 aa17.99■□□□□ 0.47
CDH3-202ENST00000429102 MYT1Q01538 1121 aa17.98■□□□□ 0.47
CDH3-202ENST00000429102 DHX57Q6P158 1386 aaKnown RBP17.96■□□□□ 0.47
CDH3-202ENST00000429102 TRIM52Q96A61 297 aa17.96■□□□□ 0.47
CDH3-202ENST00000429102 FKBP8Q14318 412 aa17.93■□□□□ 0.46
CDH3-202ENST00000429102 BAZ1BQ9UIG0 1483 aaKnown RBP17.91■□□□□ 0.46
CDH3-202ENST00000429102 CNGB1Q14028 1251 aaPredicted RBP17.91■□□□□ 0.46
CDH3-202ENST00000429102 KIF21BO75037 1637 aa17.87■□□□□ 0.45
CDH3-202ENST00000429102 ATAD2BQ9ULI0 1458 aa17.83■□□□□ 0.44
CDH3-202ENST00000429102 TSHZ2Q9NRE2 1034 aa17.83■□□□□ 0.44
CDH3-202ENST00000429102 IRX6P78412 446 aaPredicted RBP17.81■□□□□ 0.44
CDH3-202ENST00000429102 CCNB3Q8WWL7 1395 aa17.79■□□□□ 0.44
CDH3-202ENST00000429102 ARID3CA6NKF2 412 aa17.78■□□□□ 0.44
CDH3-202ENST00000429102 ARAP1Q96P48 1450 aa17.77■□□□□ 0.44
CDH3-202ENST00000429102 RAB3GAP2Q9H2M9 1393 aa17.77■□□□□ 0.43
CDH3-202ENST00000429102 NEFLP07196 543 aa17.76■□□□□ 0.43
CDH3-202ENST00000429102 UNC13AQ9UPW8 1703 aa17.75■□□□□ 0.43
CDH3-202ENST00000429102 SENP3-EIF4A1A0A087X0R7 540 aa17.72■□□□□ 0.43
CDH3-202ENST00000429102 BICRAQ9NZM4 1560 aa17.69■□□□□ 0.42
CDH3-202ENST00000429102 ANP32CO43423 234 aa17.68■□□□□ 0.42
CDH3-202ENST00000429102 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
CDH3-202ENST00000429102 CLSPNQ9HAW4 1339 aa17.66■□□□□ 0.42
CDH3-202ENST00000429102 CHIC2Q9UKJ5 165 aa17.65■□□□□ 0.42
CDH3-202ENST00000429102 POLR3GLQ9BT43 218 aa17.61■□□□□ 0.41
CDH3-202ENST00000429102 CUX2O14529 1486 aa17.6■□□□□ 0.41
CDH3-202ENST00000429102 HNRNPUQ00839 825 aaKnown RBP eCLIP17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms