Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 HMGA1P1-201ENST00000415560 1062 ntBASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 KRT17P4-201ENST00000429445 819 ntBASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 AC024293.1-201ENST00000467930 498 ntBASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 HKR1-225ENST00000592168 566 ntTSL 4 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 COQ4-204ENST00000608951 781 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 AL359091.4-201ENST00000610052 409 ntBASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SHROOM1Q2M3G4 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 FLJ16779-201ENST00000612722 7638 ntBASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 GCSHP3-201ENST00000431120 391 ntBASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 KRT18P46-201ENST00000435568 1279 ntBASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 RN7SL494P-201ENST00000461517 304 ntBASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 CD81-209ENST00000492627 886 ntTSL 3 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 AC244250.3-201ENST00000620749 366 ntBASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SHROOM1Q2M3G4 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 OR7E115P-201ENST00000382617 1024 ntBASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 USB1-205ENST00000561743 1135 ntTSL 3 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SHROOM1Q2M3G4 AC005357.2-202ENST00000590507 1060 ntBASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms