Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
NUP98P52948 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 AC020763.3-201ENST00000625095 2904 ntBASIC17.19■□□□□ 0.34
NUP98P52948 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC17.19■□□□□ 0.34
NUP98P52948 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 BCRP4-201ENST00000506079 804 ntBASIC17.19■□□□□ 0.34
NUP98P52948 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.19■□□□□ 0.34
NUP98P52948 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.19■□□□□ 0.34
NUP98P52948 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC17.19■□□□□ 0.34
NUP98P52948 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
NUP98P52948 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
NUP98P52948 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 LAMTOR4-202ENST00000441173 730 ntTSL 2 BASIC17.19■□□□□ 0.34
NUP98P52948 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 MIR3940-201ENST00000579148 102 ntBASIC17.19■□□□□ 0.34
NUP98P52948 AC006116.2-201ENST00000589958 988 ntBASIC17.19■□□□□ 0.34
NUP98P52948 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC17.19■□□□□ 0.34
NUP98P52948 AC020904.3-201ENST00000624199 442 ntBASIC17.19■□□□□ 0.34
NUP98P52948 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
NUP98P52948 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
NUP98P52948 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
NUP98P52948 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.18■□□□□ 0.34
NUP98P52948 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC17.18■□□□□ 0.34
NUP98P52948 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC17.18■□□□□ 0.34
NUP98P52948 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 HNRNPA1P58-201ENST00000403629 610 ntBASIC17.18■□□□□ 0.34
NUP98P52948 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC17.18■□□□□ 0.34
NUP98P52948 AC010086.2-201ENST00000428616 226 ntBASIC17.18■□□□□ 0.34
NUP98P52948 CUTA-204ENST00000440279 822 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 AC133141.1-201ENST00000443015 339 ntBASIC17.18■□□□□ 0.34
NUP98P52948 PSME2P2-201ENST00000453033 700 ntBASIC17.18■□□□□ 0.34
NUP98P52948 KIAA1191-210ENST00000510164 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC17.18■□□□□ 0.34
NUP98P52948 FBXO36P1-201ENST00000579006 471 ntBASIC17.18■□□□□ 0.34
NUP98P52948 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.18■□□□□ 0.34
NUP98P52948 GSTT2-203ENST00000634759 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
NUP98P52948 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.18■□□□□ 0.34
NUP98P52948 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.18■□□□□ 0.34
NUP98P52948 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
NUP98P52948 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
NUP98P52948 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
NUP98P52948 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
NUP98P52948 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 HSD3BP1-201ENST00000286193 1111 ntBASIC17.17■□□□□ 0.34
NUP98P52948 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 AC027612.2-202ENST00000445955 1199 ntBASIC17.17■□□□□ 0.34
NUP98P52948 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 SRP14-208ENST00000560773 468 ntTSL 3 BASIC17.17■□□□□ 0.34
NUP98P52948 AC018845.3-201ENST00000562536 516 ntTSL 3 BASIC17.17■□□□□ 0.34
NUP98P52948 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
NUP98P52948 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
NUP98P52948 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
NUP98P52948 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms