Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 AL008638.4-201ENST00000624792 1315 ntBASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SHANK3Q9BYB0 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 RN7SKP212-201ENST00000410851 328 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 TPT1P9-201ENST00000413759 514 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 LINC00484-201ENST00000414768 561 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 OR4C14P-201ENST00000440929 923 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 PIGCP1-201ENST00000527583 895 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 INO80E-209ENST00000567254 625 ntTSL 2 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 TPO-203ENST00000346956 2923 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC002350.2-201ENST00000623894 1828 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 KRT8P6-201ENST00000399259 1207 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC078882.1-201ENST00000436132 416 ntTSL 2 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC113398.1-201ENST00000464124 406 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 RN7SL789P-201ENST00000478944 293 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 MIR4640-201ENST00000581824 90 ntBASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SHANK3Q9BYB0 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 RNA5SP84-201ENST00000364740 107 ntBASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 POLR2LP1-206ENST00000444785 187 ntBASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 ISL1-203ENST00000511384 981 ntTSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 RN7SL162P-201ENST00000579233 292 ntBASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 AC002985.1-201ENST00000596918 685 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 TCAM1P-207ENST00000485295 1537 ntBASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 LINC00552-201ENST00000625151 2579 ntBASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SHANK3Q9BYB0 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SHANK3Q9BYB0 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms