Protein–RNA interactions for Protein: Q96ST3

SIN3A, Paired amphipathic helix protein Sin3a, humanhuman

Predictions only

Length 1,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIN3AQ96ST3 AL133466.1-201ENST00000447582 150 ntBASIC20.54■□□□□ 0.88
SIN3AQ96ST3 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 NDUFS6P1-201ENST00000485187 316 ntBASIC20.54■□□□□ 0.88
SIN3AQ96ST3 GOLGA2P8-201ENST00000505201 779 ntBASIC20.54■□□□□ 0.88
SIN3AQ96ST3 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC20.54■□□□□ 0.88
SIN3AQ96ST3 AL590824.1-201ENST00000403828 1349 ntBASIC20.53■□□□□ 0.88
SIN3AQ96ST3 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 AL583805.1-201ENST00000391389 531 ntBASIC20.53■□□□□ 0.88
SIN3AQ96ST3 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 AL353637.1-201ENST00000451571 732 ntBASIC20.53■□□□□ 0.88
SIN3AQ96ST3 RN7SL720P-201ENST00000488178 304 ntBASIC20.53■□□□□ 0.88
SIN3AQ96ST3 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 AC009560.1-201ENST00000620208 434 ntBASIC20.53■□□□□ 0.88
SIN3AQ96ST3 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 AC008620.2-201ENST00000510294 1569 ntBASIC20.53■□□□□ 0.88
SIN3AQ96ST3 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 L3MBTL1-204ENST00000418998 3365 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SIN3AQ96ST3 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AGAP12P-201ENST00000585227 2359 ntBASIC20.52■□□□□ 0.88
SIN3AQ96ST3 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AL139158.3-201ENST00000641212 1562 ntBASIC20.52■□□□□ 0.88
SIN3AQ96ST3 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AC114947.1-202ENST00000514136 344 ntBASIC20.52■□□□□ 0.88
SIN3AQ96ST3 KLF17P1-201ENST00000547105 1126 ntBASIC20.52■□□□□ 0.88
SIN3AQ96ST3 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AL133467.4-201ENST00000602953 725 ntBASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AC006453.1-201ENST00000636037 1257 ntBASIC20.52■□□□□ 0.88
SIN3AQ96ST3 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 AL359881.3-201ENST00000602640 1721 ntBASIC20.52■□□□□ 0.88
SIN3AQ96ST3 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SIN3AQ96ST3 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIN3AQ96ST3 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SIN3AQ96ST3 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC20.52■□□□□ 0.87
SIN3AQ96ST3 TUBB4AP1-201ENST00000450755 1325 ntBASIC20.52■□□□□ 0.87
SIN3AQ96ST3 KRT18P9-201ENST00000604826 1300 ntBASIC20.52■□□□□ 0.87
SIN3AQ96ST3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 BEND3P1-201ENST00000421591 1944 ntBASIC20.51■□□□□ 0.87
SIN3AQ96ST3 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 AC007274.2-201ENST00000421675 662 ntBASIC20.51■□□□□ 0.87
SIN3AQ96ST3 DUTP3-201ENST00000450025 415 ntBASIC20.51■□□□□ 0.87
SIN3AQ96ST3 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC20.51■□□□□ 0.87
SIN3AQ96ST3 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms