Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC007622.1-201ENST00000488371 535 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 HNRNPA1P56-201ENST00000505767 954 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 CICP14-201ENST00000629111 2732 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 POLR3DP1-201ENST00000398689 1176 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AL161727.1-201ENST00000457409 530 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 LRRC75A-AS1-208ENST00000480811 968 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 RN7SL47P-201ENST00000488710 299 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 MIR1587-201ENST00000583319 53 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 SOX2-OT-221ENST00000594942 675 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AGAP7P-201ENST00000582299 2062 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AGAP14-201ENST00000624701 2060 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 CRCT1-201ENST00000368790 700 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AC138392.1-201ENST00000427577 921 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 KRT18P42-201ENST00000505048 1255 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC13.63□□□□□ -0.23
VPS13AQ96RL7 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 FXYD4-204ENST00000616495 778 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 AC241585.2-202ENST00000621798 1015 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
VPS13AQ96RL7 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 TOP3B-202ENST00000398793 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 MORN2-205ENST00000410014 750 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 ACTBP14-201ENST00000411655 1089 ntBASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CLK2P1-201ENST00000416636 1294 ntBASIC13.62□□□□□ -0.23
VPS13AQ96RL7 FTLP3-201ENST00000427242 528 ntBASIC13.62□□□□□ -0.23
VPS13AQ96RL7 AC012513.2-201ENST00000441511 1137 ntBASIC13.62□□□□□ -0.23
VPS13AQ96RL7 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 AL139317.2-201ENST00000556998 158 ntBASIC13.62□□□□□ -0.23
VPS13AQ96RL7 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 PMM2-216ENST00000569958 698 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
VPS13AQ96RL7 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms