Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 MST1P2-201ENST00000457982 2291 ntBASIC16.61■□□□□ 0.25
RHBDL3P58872 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC16.6■□□□□ 0.25
RHBDL3P58872 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
RHBDL3P58872 AL157996.1-201ENST00000624684 2299 ntBASIC16.6■□□□□ 0.25
RHBDL3P58872 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC16.6■□□□□ 0.25
RHBDL3P58872 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC16.6■□□□□ 0.25
RHBDL3P58872 GGTLC4P-201ENST00000402176 664 ntBASIC16.6■□□□□ 0.25
RHBDL3P58872 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC16.6■□□□□ 0.25
RHBDL3P58872 LINP1-201ENST00000417112 917 ntTSL 2 BASIC16.6■□□□□ 0.25
RHBDL3P58872 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC16.6■□□□□ 0.25
RHBDL3P58872 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC16.6■□□□□ 0.25
RHBDL3P58872 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC16.6■□□□□ 0.25
RHBDL3P58872 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 CES1P2-201ENST00000566467 1242 ntBASIC16.6■□□□□ 0.25
RHBDL3P58872 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC16.6■□□□□ 0.25
RHBDL3P58872 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC16.6■□□□□ 0.25
RHBDL3P58872 MIR4326-201ENST00000582203 59 ntBASIC16.6■□□□□ 0.25
RHBDL3P58872 AL136982.5-201ENST00000605222 294 ntBASIC16.6■□□□□ 0.25
RHBDL3P58872 AC138466.4-201ENST00000623965 852 ntBASIC16.6■□□□□ 0.25
RHBDL3P58872 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
RHBDL3P58872 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC16.6■□□□□ 0.25
RHBDL3P58872 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.6■□□□□ 0.25
RHBDL3P58872 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 AL596257.1-201ENST00000641463 2694 ntBASIC16.6■□□□□ 0.25
RHBDL3P58872 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
RHBDL3P58872 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC16.6■□□□□ 0.25
RHBDL3P58872 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RHBDL3P58872 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.6■□□□□ 0.25
RHBDL3P58872 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.59■□□□□ 0.25
RHBDL3P58872 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 AC093462.1-201ENST00000621167 1683 ntBASIC16.59■□□□□ 0.25
RHBDL3P58872 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.59■□□□□ 0.25
RHBDL3P58872 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.59■□□□□ 0.25
RHBDL3P58872 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC16.59■□□□□ 0.25
RHBDL3P58872 KRT18P46-201ENST00000435568 1279 ntBASIC16.59■□□□□ 0.25
RHBDL3P58872 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.59■□□□□ 0.25
RHBDL3P58872 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC16.59■□□□□ 0.25
RHBDL3P58872 AC008026.2-201ENST00000495438 348 ntBASIC16.59■□□□□ 0.25
RHBDL3P58872 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC16.59■□□□□ 0.25
RHBDL3P58872 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC16.59■□□□□ 0.25
RHBDL3P58872 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC16.59■□□□□ 0.25
RHBDL3P58872 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 AC011247.3-201ENST00000603297 438 ntBASIC16.59■□□□□ 0.25
RHBDL3P58872 AC008972.2-201ENST00000606587 494 ntBASIC16.59■□□□□ 0.25
RHBDL3P58872 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
RHBDL3P58872 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC16.59■□□□□ 0.25
RHBDL3P58872 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.59■□□□□ 0.25
RHBDL3P58872 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RHBDL3P58872 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
RHBDL3P58872 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
RHBDL3P58872 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
RHBDL3P58872 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RHBDL3P58872 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC16.58■□□□□ 0.25
RHBDL3P58872 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
RHBDL3P58872 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
RHBDL3P58872 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
RHBDL3P58872 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.25
RHBDL3P58872 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
RHBDL3P58872 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.58■□□□□ 0.24
RHBDL3P58872 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
RHBDL3P58872 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms