Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CIITAP33076 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.98■□□□□ 0.15
CIITAP33076 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
CIITAP33076 OR2I1P-209ENST00000641730 5365 ntBASIC15.97■□□□□ 0.15
CIITAP33076 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 KRT8P18-201ENST00000413425 1445 ntBASIC15.97■□□□□ 0.15
CIITAP33076 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 AK2P2-201ENST00000439142 405 ntBASIC15.97■□□□□ 0.15
CIITAP33076 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC15.97■□□□□ 0.15
CIITAP33076 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC15.97■□□□□ 0.15
CIITAP33076 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC15.97■□□□□ 0.15
CIITAP33076 TMEM198B-204ENST00000484016 896 ntBASIC15.97■□□□□ 0.15
CIITAP33076 RN7SL81P-201ENST00000493781 261 ntBASIC15.97■□□□□ 0.15
CIITAP33076 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 MRPL22P1-201ENST00000505398 616 ntBASIC15.97■□□□□ 0.15
CIITAP33076 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.97■□□□□ 0.15
CIITAP33076 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 POLD4-208ENST00000532830 904 ntTSL 3 BASIC15.97■□□□□ 0.15
CIITAP33076 NAA40-205ENST00000539656 577 ntTSL 4 BASIC15.97■□□□□ 0.15
CIITAP33076 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 TP53-221ENST00000615910 1149 ntTSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC15.97■□□□□ 0.15
CIITAP33076 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 API5-208ENST00000531273 1868 ntTSL 2 BASIC15.97■□□□□ 0.15
CIITAP33076 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
CIITAP33076 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
CIITAP33076 AC061965.1-201ENST00000560524 1465 ntBASIC15.97■□□□□ 0.15
CIITAP33076 SNX18-202ENST00000343017 3140 ntBASIC15.97■□□□□ 0.15
CIITAP33076 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.96■□□□□ 0.15
CIITAP33076 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 TUBB4AP1-201ENST00000450755 1325 ntBASIC15.96■□□□□ 0.15
CIITAP33076 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.96■□□□□ 0.15
CIITAP33076 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC15.96■□□□□ 0.15
CIITAP33076 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
CIITAP33076 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC15.96■□□□□ 0.15
CIITAP33076 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 AL512306.1-201ENST00000432698 848 ntBASIC15.96■□□□□ 0.15
CIITAP33076 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.96■□□□□ 0.15
CIITAP33076 AC018638.5-201ENST00000450885 754 ntBASIC15.96■□□□□ 0.15
CIITAP33076 RN7SL788P-201ENST00000460504 316 ntBASIC15.96■□□□□ 0.15
CIITAP33076 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC15.96■□□□□ 0.15
CIITAP33076 ORAOV1P1-201ENST00000503108 395 ntBASIC15.96■□□□□ 0.15
CIITAP33076 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC15.96■□□□□ 0.15
CIITAP33076 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC15.96■□□□□ 0.15
CIITAP33076 TPM1-223ENST00000560445 485 ntTSL 3 BASIC15.96■□□□□ 0.15
CIITAP33076 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 SIGLEC22P-201ENST00000599104 714 ntBASIC15.96■□□□□ 0.15
CIITAP33076 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC15.96■□□□□ 0.15
CIITAP33076 GOLGA8IP-202ENST00000611635 2100 ntBASIC15.96■□□□□ 0.15
CIITAP33076 AP001184.1-201ENST00000637936 376 ntBASIC15.96■□□□□ 0.15
CIITAP33076 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CIITAP33076 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
CIITAP33076 ABR-228ENST00000574437 3196 ntTSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms