Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 AC139713.2-207ENST00000641556 1292 ntBASIC12.48□□□□□ -0.41
COL8A1P27658 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
COL8A1P27658 WARS-232ENST00000556645 2508 ntTSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
COL8A1P27658 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
COL8A1P27658 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
COL8A1P27658 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 AC023157.3-201ENST00000619086 2088 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 PIFO-201ENST00000369737 746 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 MAGEA7P-201ENST00000436482 942 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 SOD2-205ENST00000444946 917 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC12.47□□□□□ -0.41
COL8A1P27658 RN7SL375P-201ENST00000492442 298 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 ITGB5-AS1-201ENST00000495917 460 ntTSL 3 BASIC12.47□□□□□ -0.41
COL8A1P27658 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC12.47□□□□□ -0.41
COL8A1P27658 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 KNOP1P1-201ENST00000542108 989 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 AC124068.2-201ENST00000569473 1109 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 AC006116.2-201ENST00000589958 988 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 AC080013.5-201ENST00000607044 679 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 AC010503.4-201ENST00000615487 688 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 LINC01002-234ENST00000633808 848 ntTSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 MVK-217ENST00000639206 367 ntTSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC12.47□□□□□ -0.41
COL8A1P27658 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
COL8A1P27658 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC12.47□□□□□ -0.41
COL8A1P27658 PPT1-215ENST00000641471 2368 ntBASIC12.47□□□□□ -0.41
COL8A1P27658 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
COL8A1P27658 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC12.46□□□□□ -0.41
COL8A1P27658 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 BRD7P5-201ENST00000299197 1822 ntBASIC12.46□□□□□ -0.41
COL8A1P27658 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 LILRP1-201ENST00000444199 1370 ntBASIC12.46□□□□□ -0.41
COL8A1P27658 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC12.46□□□□□ -0.41
COL8A1P27658 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
COL8A1P27658 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms