Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AC108462.1-201ENST00000457467 850 ntTSL 3 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 NDUFS6P1-201ENST00000485187 316 ntBASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 ORAOV1P1-201ENST00000503108 395 ntBASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 ELP5-212ENST00000574255 671 ntTSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AC107464.3-201ENST00000609172 737 ntBASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 MIR6842-201ENST00000612539 65 ntBASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 AP001065.2-201ENST00000617205 644 ntBASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CTDP1Q9Y5B0 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 CCT8L1P-201ENST00000465400 1674 ntBASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.52■□□□□ 0.23
CTDP1Q9Y5B0 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 MIR645-201ENST00000385283 94 ntBASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 HLA-DMA-203ENST00000395305 777 ntBASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 DNM1P30-201ENST00000563586 452 ntBASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 SIGLEC22P-201ENST00000599104 714 ntBASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CTDP1Q9Y5B0 AC068418.2-201ENST00000577309 3703 ntBASIC16.5■□□□□ 0.23
CTDP1Q9Y5B0 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CTDP1Q9Y5B0 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CTDP1Q9Y5B0 OR2I1P-208ENST00000641137 4948 ntBASIC16.5■□□□□ 0.23
CTDP1Q9Y5B0 NR3C2-209ENST00000625323 5909 ntTSL 5 BASIC16.5■□□□□ 0.23
CTDP1Q9Y5B0 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CTDP1Q9Y5B0 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms