Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 TAMM41-201ENST00000273037 1297 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AL355994.1-201ENST00000424379 260 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 NAA40-205ENST00000539656 577 ntTSL 4 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 SULT1A3-206ENST00000563322 906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 SULT1A4-204ENST00000565290 906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC132812.1-201ENST00000583145 892 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC130324.1-201ENST00000584157 831 ntTSL 3 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC108673.2-201ENST00000608909 565 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AL365181.1-201ENST00000564032 1828 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.4■□□□□ 0.06
LRCH3Q96II8 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
LRCH3Q96II8 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
LRCH3Q96II8 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 THAP4-203ENST00000402545 833 ntTSL 5 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 TLE1P1-201ENST00000422965 589 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 HNRNPA1P21-201ENST00000424115 961 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 SAP18P2-201ENST00000434334 459 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 TPST2P1-201ENST00000564073 1102 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 AL132657.2-201ENST00000564417 358 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 MIR4746-201ENST00000579802 71 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 RN7SL300P-201ENST00000582522 318 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 RN7SL478P-201ENST00000584358 298 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 AL133467.4-201ENST00000602953 725 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 URAHP-205ENST00000610227 398 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 AC022960.2-201ENST00000616300 666 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.39■□□□□ 0.05
LRCH3Q96II8 AGGF1P1-201ENST00000509500 2073 ntBASIC15.39■□□□□ 0.05
LRCH3Q96II8 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LRCH3Q96II8 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LRCH3Q96II8 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LRCH3Q96II8 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms