Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
RHBDL3P58872 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC16.63■□□□□ 0.25
RHBDL3P58872 AC024293.1-201ENST00000467930 498 ntBASIC16.63■□□□□ 0.25
RHBDL3P58872 PFN2-212ENST00000490975 858 ntTSL 4 BASIC16.63■□□□□ 0.25
RHBDL3P58872 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDL3P58872 DLK1-205ENST00000556051 469 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDL3P58872 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC16.63■□□□□ 0.25
RHBDL3P58872 AC010976.2-201ENST00000609697 852 ntBASIC16.63■□□□□ 0.25
RHBDL3P58872 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC16.63■□□□□ 0.25
RHBDL3P58872 AC152010.1-201ENST00000415779 2006 ntBASIC16.63■□□□□ 0.25
RHBDL3P58872 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
RHBDL3P58872 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 AC008620.2-201ENST00000510294 1569 ntBASIC16.63■□□□□ 0.25
RHBDL3P58872 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
RHBDL3P58872 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC16.63■□□□□ 0.25
RHBDL3P58872 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC16.63■□□□□ 0.25
RHBDL3P58872 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
RHBDL3P58872 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 DDC-213ENST00000617822 1809 ntTSL 3 BASIC16.62■□□□□ 0.25
RHBDL3P58872 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RHBDL3P58872 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
RHBDL3P58872 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 AC005722.1-201ENST00000431878 964 ntBASIC16.62■□□□□ 0.25
RHBDL3P58872 PSMD4P1-201ENST00000433951 1109 ntBASIC16.62■□□□□ 0.25
RHBDL3P58872 RN7SL494P-201ENST00000461517 304 ntBASIC16.62■□□□□ 0.25
RHBDL3P58872 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
RHBDL3P58872 FO393412.1-201ENST00000619841 382 ntBASIC16.62■□□□□ 0.25
RHBDL3P58872 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
RHBDL3P58872 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC16.62■□□□□ 0.25
RHBDL3P58872 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.62■□□□□ 0.25
RHBDL3P58872 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 TCAM1P-207ENST00000485295 1537 ntBASIC16.61■□□□□ 0.25
RHBDL3P58872 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
RHBDL3P58872 TMSB4X-202ENST00000380635 767 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 RN7SL582P-201ENST00000491078 279 ntBASIC16.61■□□□□ 0.25
RHBDL3P58872 TREHP1-201ENST00000531328 465 ntBASIC16.61■□□□□ 0.25
RHBDL3P58872 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.61■□□□□ 0.25
RHBDL3P58872 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 USB1-205ENST00000561743 1135 ntTSL 3 BASIC16.61■□□□□ 0.25
RHBDL3P58872 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 AC244250.3-201ENST00000620749 366 ntBASIC16.61■□□□□ 0.25
RHBDL3P58872 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC16.61■□□□□ 0.25
RHBDL3P58872 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
RHBDL3P58872 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.61■□□□□ 0.25
RHBDL3P58872 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
RHBDL3P58872 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms