Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
HOXA1P49639 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC11.98□□□□□ -0.49
HOXA1P49639 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC11.98□□□□□ -0.49
HOXA1P49639 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 AL589987.1-201ENST00000453380 819 ntBASIC11.98□□□□□ -0.49
HOXA1P49639 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC11.98□□□□□ -0.49
HOXA1P49639 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC11.98□□□□□ -0.49
HOXA1P49639 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 AC015911.4-201ENST00000588022 1070 ntBASIC11.98□□□□□ -0.49
HOXA1P49639 SRD5A3P1-201ENST00000603021 949 ntBASIC11.98□□□□□ -0.49
HOXA1P49639 AC093813.1-201ENST00000605066 256 ntBASIC11.98□□□□□ -0.49
HOXA1P49639 C22orf39-202ENST00000399562 3350 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
HOXA1P49639 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 LHX6-204ENST00000394319 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 DDO-201ENST00000368923 1953 ntTSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 PNMA5-203ENST00000439251 3213 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
HOXA1P49639 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC11.98□□□□□ -0.49
HOXA1P49639 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC11.97□□□□□ -0.49
HOXA1P49639 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
HOXA1P49639 MAD1L1-201ENST00000265854 2718 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 SLC44A4-202ENST00000229729 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 AL136172.1-201ENST00000598590 1394 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HOXA1P49639 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC11.97□□□□□ -0.49
HOXA1P49639 BRF1-202ENST00000379932 884 ntTSL 5 BASIC11.97□□□□□ -0.49
HOXA1P49639 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC11.97□□□□□ -0.49
HOXA1P49639 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC11.97□□□□□ -0.49
HOXA1P49639 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXA1P49639 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXA1P49639 SPDYE18-201ENST00000510091 1050 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC11.97□□□□□ -0.49
HOXA1P49639 AC022616.1-201ENST00000518688 554 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXA1P49639 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC11.97□□□□□ -0.49
HOXA1P49639 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXA1P49639 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC11.97□□□□□ -0.49
HOXA1P49639 RARRES2P5-201ENST00000564013 466 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXA1P49639 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
HOXA1P49639 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
HOXA1P49639 AL390754.1-201ENST00000619088 582 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 AC093028.1-201ENST00000622998 982 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 ACO2-202ENST00000396512 2811 ntTSL 5 BASIC11.97□□□□□ -0.49
HOXA1P49639 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC11.97□□□□□ -0.49
HOXA1P49639 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 INE2-201ENST00000630399 1874 ntBASIC11.97□□□□□ -0.49
HOXA1P49639 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HOXA1P49639 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms