Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
CDH3P22223 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDH3P22223 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
CDH3P22223 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CDH3P22223 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC14.14□□□□□ -0.15
CDH3P22223 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CDH3P22223 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CDH3P22223 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.14□□□□□ -0.15
CDH3P22223 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.14□□□□□ -0.15
CDH3P22223 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.14□□□□□ -0.15
CDH3P22223 AC011742.3-201ENST00000439053 820 ntBASIC14.14□□□□□ -0.15
CDH3P22223 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.14□□□□□ -0.15
CDH3P22223 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 HIST2H2BC-201ENST00000498492 580 ntBASIC14.14□□□□□ -0.15
CDH3P22223 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.14□□□□□ -0.15
CDH3P22223 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.14□□□□□ -0.15
CDH3P22223 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC14.14□□□□□ -0.15
CDH3P22223 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 ACTG1P17-201ENST00000558391 1119 ntBASIC14.14□□□□□ -0.15
CDH3P22223 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.14□□□□□ -0.15
CDH3P22223 AC091544.8-201ENST00000619490 361 ntBASIC14.14□□□□□ -0.15
CDH3P22223 AC068587.8-201ENST00000641239 219 ntBASIC14.14□□□□□ -0.15
CDH3P22223 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
CDH3P22223 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
CDH3P22223 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CDH3P22223 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 CDYL-205ENST00000449732 2139 ntTSL 2 BASIC14.14□□□□□ -0.15
CDH3P22223 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.14□□□□□ -0.15
CDH3P22223 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CDH3P22223 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CDH3P22223 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.13□□□□□ -0.15
CDH3P22223 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
CDH3P22223 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 AC011474.4-201ENST00000623523 2076 ntBASIC14.13□□□□□ -0.15
CDH3P22223 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CDH3P22223 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
CDH3P22223 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CDH3P22223 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 AC015688.4-201ENST00000580780 1647 ntBASIC14.13□□□□□ -0.15
CDH3P22223 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 AC016700.1-201ENST00000429424 312 ntBASIC14.13□□□□□ -0.15
CDH3P22223 AL157407.1-201ENST00000435784 904 ntBASIC14.13□□□□□ -0.15
CDH3P22223 AC005077.2-201ENST00000449786 690 ntBASIC14.13□□□□□ -0.15
CDH3P22223 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 RBM8B-201ENST00000555532 525 ntBASIC14.13□□□□□ -0.15
CDH3P22223 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
CDH3P22223 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 Z98259.2-201ENST00000641583 609 ntBASIC14.13□□□□□ -0.15
CDH3P22223 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.13□□□□□ -0.15
CDH3P22223 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CDH3P22223 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CDH3P22223 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms