Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 TUBA3GP-201ENST00000410028 1325 ntBASIC8.51□□□□□ -1.05
APOBP04114 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
APOBP04114 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC8.51□□□□□ -1.05
APOBP04114 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
APOBP04114 HSPA8P5-201ENST00000456928 2069 ntBASIC8.51□□□□□ -1.05
APOBP04114 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
APOBP04114 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC8.51□□□□□ -1.05
APOBP04114 HLA-W-207ENST00000439514 771 ntBASIC8.51□□□□□ -1.05
APOBP04114 AP001979.2-201ENST00000526254 975 ntTSL 5 BASIC8.51□□□□□ -1.05
APOBP04114 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC8.51□□□□□ -1.05
APOBP04114 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC8.5□□□□□ -1.05
APOBP04114 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 NOS2P3-201ENST00000411468 867 ntBASIC8.5□□□□□ -1.05
APOBP04114 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC8.5□□□□□ -1.05
APOBP04114 HMGN1P4-201ENST00000419500 290 ntBASIC8.5□□□□□ -1.05
APOBP04114 NOS2P2-201ENST00000426269 867 ntBASIC8.5□□□□□ -1.05
APOBP04114 AC069277.1-201ENST00000433639 1083 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC8.5□□□□□ -1.05
APOBP04114 RN7SL111P-201ENST00000468841 285 ntBASIC8.5□□□□□ -1.05
APOBP04114 AC022382.1-201ENST00000602768 336 ntBASIC8.5□□□□□ -1.05
APOBP04114 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 FMO6P-201ENST00000236166 1620 ntBASIC8.5□□□□□ -1.05
APOBP04114 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
APOBP04114 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 SULT1A3-201ENST00000338971 1097 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 SNORD23-201ENST00000408876 110 ntBASIC8.5□□□□□ -1.05
APOBP04114 RPSAP61-201ENST00000412542 878 ntBASIC8.5□□□□□ -1.05
APOBP04114 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 PDPN-208ENST00000509009 571 ntTSL 4 BASIC8.5□□□□□ -1.05
APOBP04114 SAA2-206ENST00000530400 323 ntTSL 3 BASIC8.5□□□□□ -1.05
APOBP04114 AC112694.1-202ENST00000540985 943 ntBASIC8.5□□□□□ -1.05
APOBP04114 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
APOBP04114 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC8.5□□□□□ -1.05
APOBP04114 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
APOBP04114 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
APOBP04114 AL137077.1-201ENST00000442115 528 ntBASIC8.5□□□□□ -1.05
APOBP04114 AP003108.1-201ENST00000534856 554 ntTSL 4 BASIC8.5□□□□□ -1.05
APOBP04114 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC8.5□□□□□ -1.05
APOBP04114 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC8.5□□□□□ -1.05
APOBP04114 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 TKT-201ENST00000296289 1931 ntTSL 5 BASIC8.5□□□□□ -1.05
APOBP04114 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
APOBP04114 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
APOBP04114 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC8.49□□□□□ -1.05
APOBP04114 RIDA-201ENST00000254878 1057 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 PMF1-201ENST00000368273 884 ntTSL 2 BASIC8.49□□□□□ -1.05
APOBP04114 Metazoa_SRP.8-201ENST00000398067 251 ntBASIC8.49□□□□□ -1.05
APOBP04114 AL391903.1-201ENST00000407513 365 ntBASIC8.49□□□□□ -1.05
APOBP04114 CORO1C-203ENST00000421578 1296 ntTSL 2 BASIC8.49□□□□□ -1.05
APOBP04114 C5orf38-203ENST00000457752 387 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 AC044802.2-201ENST00000551187 434 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC8.49□□□□□ -1.05
APOBP04114 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC8.49□□□□□ -1.05
APOBP04114 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC8.49□□□□□ -1.05
APOBP04114 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC8.49□□□□□ -1.05
APOBP04114 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC8.49□□□□□ -1.05
APOBP04114 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC8.49□□□□□ -1.05
APOBP04114 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
APOBP04114 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC8.49□□□□□ -1.05
APOBP04114 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC8.49□□□□□ -1.05
APOBP04114 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms