Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
PCDH1Q08174 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
PCDH1Q08174 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 AL031595.1-201ENST00000623969 4709 ntBASIC13.84□□□□□ -0.19
PCDH1Q08174 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
PCDH1Q08174 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 BTBD6P1-201ENST00000412176 1267 ntBASIC13.84□□□□□ -0.19
PCDH1Q08174 AC092580.1-201ENST00000433998 658 ntBASIC13.84□□□□□ -0.19
PCDH1Q08174 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC13.84□□□□□ -0.19
PCDH1Q08174 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.84□□□□□ -0.19
PCDH1Q08174 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC13.84□□□□□ -0.19
PCDH1Q08174 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 NAA38-206ENST00000576384 424 ntTSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.84□□□□□ -0.19
PCDH1Q08174 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 TCAF1P1-201ENST00000414990 2232 ntBASIC13.84□□□□□ -0.19
PCDH1Q08174 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.84□□□□□ -0.19
PCDH1Q08174 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
PCDH1Q08174 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC13.84□□□□□ -0.19
PCDH1Q08174 AC107918.4-201ENST00000641966 3141 ntBASIC13.84□□□□□ -0.19
PCDH1Q08174 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
PCDH1Q08174 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.83□□□□□ -0.19
PCDH1Q08174 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.19
PCDH1Q08174 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
PCDH1Q08174 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
PCDH1Q08174 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.83□□□□□ -0.19
PCDH1Q08174 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 CR383656.2-201ENST00000548656 2254 ntBASIC13.83□□□□□ -0.2
PCDH1Q08174 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
PCDH1Q08174 RPL13AP3-202ENST00000494676 1473 ntBASIC13.83□□□□□ -0.2
PCDH1Q08174 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
PCDH1Q08174 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC078875.1-201ENST00000431907 724 ntBASIC13.83□□□□□ -0.2
PCDH1Q08174 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.83□□□□□ -0.2
PCDH1Q08174 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.83□□□□□ -0.2
PCDH1Q08174 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC009542.2-202ENST00000619004 1067 ntBASIC13.83□□□□□ -0.2
PCDH1Q08174 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC068587.8-201ENST00000641239 219 ntBASIC13.83□□□□□ -0.2
PCDH1Q08174 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
PCDH1Q08174 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.83□□□□□ -0.2
PCDH1Q08174 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
PCDH1Q08174 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms