Protein–RNA interactions for Protein: P61758

VBP1, Prefoldin subunit 3, humanhuman

Predictions only

Length 197 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VBP1P61758 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC12.87□□□□□ -0.35
VBP1P61758 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC12.87□□□□□ -0.35
VBP1P61758 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC12.87□□□□□ -0.35
VBP1P61758 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC12.87□□□□□ -0.35
VBP1P61758 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.87□□□□□ -0.35
VBP1P61758 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC12.87□□□□□ -0.35
VBP1P61758 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC12.87□□□□□ -0.35
VBP1P61758 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC12.87□□□□□ -0.35
VBP1P61758 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC12.87□□□□□ -0.35
VBP1P61758 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC12.87□□□□□ -0.35
VBP1P61758 WNT5A-201ENST00000264634 6176 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 STRIP2-201ENST00000249344 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 HOTTIP-203ENST00000521028 3345 ntTSL 5 BASIC12.87□□□□□ -0.35
VBP1P61758 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
VBP1P61758 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC12.87□□□□□ -0.35
VBP1P61758 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC12.87□□□□□ -0.35
VBP1P61758 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
VBP1P61758 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 RFWD3-201ENST00000361070 4957 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC12.87□□□□□ -0.35
VBP1P61758 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 PDIA3P1-201ENST00000471856 1510 ntBASIC12.87□□□□□ -0.35
VBP1P61758 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC12.87□□□□□ -0.35
VBP1P61758 CSNK1G1-205ENST00000607537 2083 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC12.87□□□□□ -0.35
VBP1P61758 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
VBP1P61758 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC12.87□□□□□ -0.35
VBP1P61758 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
VBP1P61758 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 ZNF239-205ENST00000535642 1904 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 ITGA5-201ENST00000293379 4444 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 AL358334.2-201ENST00000553648 4714 ntTSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 TBC1D13-202ENST00000372648 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 MSH6-210ENST00000540021 3930 ntTSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 MKL1-210ENST00000614754 3917 ntTSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 PKIG-203ENST00000372887 769 ntTSL 3 BASIC12.86□□□□□ -0.35
VBP1P61758 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC12.86□□□□□ -0.35
VBP1P61758 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC12.86□□□□□ -0.35
VBP1P61758 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 GCOM2-201ENST00000509133 1104 ntBASIC12.86□□□□□ -0.35
VBP1P61758 RNA5SP419-201ENST00000515908 135 ntBASIC12.86□□□□□ -0.35
VBP1P61758 GATD1-206ENST00000526325 756 ntTSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
VBP1P61758 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC12.86□□□□□ -0.35
VBP1P61758 AP001002.3-201ENST00000623482 206 ntBASIC12.86□□□□□ -0.35
VBP1P61758 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 SLC38A7-215ENST00000570101 4549 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 ARHGEF2-206ENST00000462460 4438 ntTSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 LINC01993-201ENST00000374945 2934 ntTSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 SMG9-201ENST00000270066 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.86□□□□□ -0.35
VBP1P61758 SEMA6D-202ENST00000354744 5931 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 FAM237B-201ENST00000637645 3877 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
VBP1P61758 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
VBP1P61758 CELF4-218ENST00000591287 3757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
VBP1P61758 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
VBP1P61758 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
VBP1P61758 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
VBP1P61758 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
VBP1P61758 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms