Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 PRMT1P1-201ENST00000604252 1009 ntBASIC17.28■□□□□ 0.36
NUP98P52948 LINC00969-253ENST00000625338 804 ntTSL 5 BASIC17.28■□□□□ 0.36
NUP98P52948 SNORA50.1-201ENST00000628590 135 ntBASIC17.28■□□□□ 0.36
NUP98P52948 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC17.28■□□□□ 0.36
NUP98P52948 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC17.28■□□□□ 0.36
NUP98P52948 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NUP98P52948 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUP98P52948 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC17.27■□□□□ 0.36
NUP98P52948 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
NUP98P52948 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
NUP98P52948 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.27■□□□□ 0.36
NUP98P52948 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NUP98P52948 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC17.27■□□□□ 0.36
NUP98P52948 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.27■□□□□ 0.36
NUP98P52948 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC17.27■□□□□ 0.36
NUP98P52948 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC17.27■□□□□ 0.36
NUP98P52948 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
NUP98P52948 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
NUP98P52948 MST1P2-201ENST00000457982 2291 ntBASIC17.27■□□□□ 0.36
NUP98P52948 ENPP7P8-202ENST00000527856 1345 ntBASIC17.27■□□□□ 0.36
NUP98P52948 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
NUP98P52948 SERF2-206ENST00000409291 807 ntTSL 3 BASIC17.27■□□□□ 0.36
NUP98P52948 HNRNPA1P21-201ENST00000424115 961 ntBASIC17.27■□□□□ 0.36
NUP98P52948 CDCA4P4-201ENST00000435216 680 ntBASIC17.27■□□□□ 0.36
NUP98P52948 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC17.27■□□□□ 0.36
NUP98P52948 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC17.27■□□□□ 0.36
NUP98P52948 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC17.27■□□□□ 0.36
NUP98P52948 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC17.27■□□□□ 0.36
NUP98P52948 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC17.27■□□□□ 0.36
NUP98P52948 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
NUP98P52948 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NUP98P52948 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NUP98P52948 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
NUP98P52948 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
NUP98P52948 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
NUP98P52948 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
NUP98P52948 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.26■□□□□ 0.35
NUP98P52948 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
NUP98P52948 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC17.26■□□□□ 0.35
NUP98P52948 JAZF1-AS1-201ENST00000436758 548 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC17.26■□□□□ 0.35
NUP98P52948 METTL7AP1-201ENST00000547343 496 ntBASIC17.26■□□□□ 0.35
NUP98P52948 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC17.26■□□□□ 0.35
NUP98P52948 Metazoa_SRP.63-201ENST00000617144 298 ntBASIC17.26■□□□□ 0.35
NUP98P52948 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC17.26■□□□□ 0.35
NUP98P52948 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.26■□□□□ 0.35
NUP98P52948 ERP29-202ENST00000455836 1333 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 PGAM1P11-201ENST00000416729 680 ntBASIC17.26■□□□□ 0.35
NUP98P52948 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
NUP98P52948 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 SRPK2P-201ENST00000523408 1100 ntBASIC17.26■□□□□ 0.35
NUP98P52948 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC17.26■□□□□ 0.35
NUP98P52948 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC17.26■□□□□ 0.35
NUP98P52948 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC17.26■□□□□ 0.35
NUP98P52948 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 LINC02486-201ENST00000604157 3000 ntBASIC17.26■□□□□ 0.35
NUP98P52948 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
NUP98P52948 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
NUP98P52948 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC17.26■□□□□ 0.35
NUP98P52948 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
NUP98P52948 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
NUP98P52948 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
NUP98P52948 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
NUP98P52948 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms