Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC11.83□□□□□ -0.52
CDX1P47902 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 MPV17-206ENST00000402722 827 ntTSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 CD8B2-202ENST00000417670 633 ntBASIC11.83□□□□□ -0.52
CDX1P47902 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC11.83□□□□□ -0.52
CDX1P47902 GHSR-202ENST00000427970 912 ntBASIC11.83□□□□□ -0.52
CDX1P47902 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 CSF2RBP1-201ENST00000447905 391 ntBASIC11.83□□□□□ -0.52
CDX1P47902 AHRR-211ENST00000515206 462 ntTSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 RNA5SP486-201ENST00000515961 83 ntBASIC11.83□□□□□ -0.52
CDX1P47902 RNA5SP412-201ENST00000516234 123 ntBASIC11.83□□□□□ -0.52
CDX1P47902 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 AC022616.1-201ENST00000518688 554 ntBASIC11.83□□□□□ -0.52
CDX1P47902 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 AC023310.1-201ENST00000554836 735 ntBASIC11.83□□□□□ -0.52
CDX1P47902 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 RN7SL48P-201ENST00000579283 293 ntBASIC11.83□□□□□ -0.52
CDX1P47902 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 MIR4259-201ENST00000584466 101 ntBASIC11.83□□□□□ -0.52
CDX1P47902 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.83□□□□□ -0.52
CDX1P47902 CICP1-201ENST00000416803 2410 ntBASIC11.83□□□□□ -0.52
CDX1P47902 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC11.83□□□□□ -0.52
CDX1P47902 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC11.83□□□□□ -0.52
CDX1P47902 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
CDX1P47902 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC11.83□□□□□ -0.52
CDX1P47902 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
CDX1P47902 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 TRIM46-205ENST00000392451 3195 ntTSL 2 BASIC11.82□□□□□ -0.52
CDX1P47902 SLC26A6-207ENST00000420764 2630 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 AC006001.1-201ENST00000325130 474 ntBASIC11.82□□□□□ -0.52
CDX1P47902 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC11.82□□□□□ -0.52
CDX1P47902 FAM21FP-201ENST00000426241 1131 ntBASIC11.82□□□□□ -0.52
CDX1P47902 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC11.82□□□□□ -0.52
CDX1P47902 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC11.82□□□□□ -0.52
CDX1P47902 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC11.82□□□□□ -0.52
CDX1P47902 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 AC244669.2-201ENST00000612320 853 ntBASIC11.82□□□□□ -0.52
CDX1P47902 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC11.82□□□□□ -0.52
CDX1P47902 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 SGMS1-202ENST00000361781 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
CDX1P47902 SUPV3L1-201ENST00000359655 2484 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 LIPE-201ENST00000244289 3813 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CDX1P47902 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
CDX1P47902 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms