Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC13.56□□□□□ -0.24
SOX3P41225 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
SOX3P41225 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC13.56□□□□□ -0.24
SOX3P41225 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
SOX3P41225 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 AC005740.2-201ENST00000511085 419 ntBASIC13.56□□□□□ -0.24
SOX3P41225 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.56□□□□□ -0.24
SOX3P41225 AC114689.3-201ENST00000583687 2991 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 MIR6720-201ENST00000611664 98 ntBASIC13.56□□□□□ -0.24
SOX3P41225 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
SOX3P41225 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.56□□□□□ -0.24
SOX3P41225 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
SOX3P41225 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 AL008718.2-201ENST00000609206 1313 ntBASIC13.56□□□□□ -0.24
SOX3P41225 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.56□□□□□ -0.24
SOX3P41225 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.56□□□□□ -0.24
SOX3P41225 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
SOX3P41225 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
SOX3P41225 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
SOX3P41225 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.55□□□□□ -0.24
SOX3P41225 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.55□□□□□ -0.24
SOX3P41225 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
SOX3P41225 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX3P41225 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX3P41225 AC012441.2-201ENST00000444843 739 ntBASIC13.55□□□□□ -0.24
SOX3P41225 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.55□□□□□ -0.24
SOX3P41225 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC13.55□□□□□ -0.24
SOX3P41225 AC106794.1-201ENST00000506935 792 ntBASIC13.55□□□□□ -0.24
SOX3P41225 SCARNA20.5-201ENST00000516991 142 ntBASIC13.55□□□□□ -0.24
SOX3P41225 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
SOX3P41225 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
SOX3P41225 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 AC005324.6-201ENST00000587972 613 ntBASIC13.55□□□□□ -0.24
SOX3P41225 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC13.55□□□□□ -0.24
SOX3P41225 PCBP2-OT1-201ENST00000634357 590 ntBASIC13.55□□□□□ -0.24
SOX3P41225 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.55□□□□□ -0.24
SOX3P41225 AC004923.1-202ENST00000642106 209 ntBASIC13.55□□□□□ -0.24
SOX3P41225 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
SOX3P41225 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC13.55□□□□□ -0.24
SOX3P41225 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
SOX3P41225 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms