Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 UCN3-201ENST00000380433 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC16.56■□□□□ 0.24
COL4A5P29400 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 AC005077.3-201ENST00000449614 213 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC16.56■□□□□ 0.24
COL4A5P29400 DIO3OS-211ENST00000557532 712 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 ACTBP9-201ENST00000587663 1099 ntBASIC16.56■□□□□ 0.24
COL4A5P29400 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC16.56■□□□□ 0.24
COL4A5P29400 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
COL4A5P29400 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.56■□□□□ 0.24
COL4A5P29400 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL4A5P29400 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
COL4A5P29400 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 BCL2-203ENST00000589955 5011 ntBASIC16.55■□□□□ 0.24
COL4A5P29400 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC16.55■□□□□ 0.24
COL4A5P29400 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL4A5P29400 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 IGFL1-201ENST00000437936 769 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 DLGAP4-AS1-203ENST00000439595 1207 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 GYG1-209ENST00000483267 801 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 AC090820.1-201ENST00000519722 591 ntBASIC16.55■□□□□ 0.24
COL4A5P29400 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC16.55■□□□□ 0.24
COL4A5P29400 AL512356.1-201ENST00000548203 535 ntTSL 3 BASIC16.55■□□□□ 0.24
COL4A5P29400 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC16.55■□□□□ 0.24
COL4A5P29400 EEF1DP7-201ENST00000580496 513 ntBASIC16.55■□□□□ 0.24
COL4A5P29400 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.55■□□□□ 0.24
COL4A5P29400 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
COL4A5P29400 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL4A5P29400 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
COL4A5P29400 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COL4A5P29400 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 KRT8P25-201ENST00000473150 1456 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
COL4A5P29400 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 AL121994.1-201ENST00000413189 402 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 AL954722.1-201ENST00000431238 259 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC16.54■□□□□ 0.24
COL4A5P29400 AC007279.1-201ENST00000448547 837 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC16.54■□□□□ 0.24
COL4A5P29400 RN7SL672P-201ENST00000474091 317 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 FAM86JP-202ENST00000484500 988 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC16.54■□□□□ 0.24
COL4A5P29400 IGHVII-74-1-201ENST00000517572 241 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC16.54■□□□□ 0.24
COL4A5P29400 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC16.54■□□□□ 0.24
COL4A5P29400 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC16.54■□□□□ 0.24
COL4A5P29400 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 BAP1-211ENST00000615113 489 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
COL4A5P29400 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.54■□□□□ 0.24
COL4A5P29400 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL4A5P29400 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms