Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.66□□□□□ -0.06
HMGA1P17096 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.66□□□□□ -0.06
HMGA1P17096 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
HMGA1P17096 AC016397.2-201ENST00000624848 1985 ntBASIC14.65□□□□□ -0.06
HMGA1P17096 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.65□□□□□ -0.06
HMGA1P17096 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.65□□□□□ -0.06
HMGA1P17096 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 AL596257.1-201ENST00000641463 2694 ntBASIC14.65□□□□□ -0.06
HMGA1P17096 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
HMGA1P17096 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC14.65□□□□□ -0.06
HMGA1P17096 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
HMGA1P17096 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HMGA1P17096 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
HMGA1P17096 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC14.65□□□□□ -0.06
HMGA1P17096 ACTG1P19-201ENST00000418987 1116 ntBASIC14.65□□□□□ -0.06
HMGA1P17096 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC14.65□□□□□ -0.06
HMGA1P17096 RN7SKP155-201ENST00000516031 288 ntBASIC14.65□□□□□ -0.06
HMGA1P17096 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC14.65□□□□□ -0.06
HMGA1P17096 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC14.65□□□□□ -0.06
HMGA1P17096 AL049840.2-201ENST00000602722 535 ntBASIC14.65□□□□□ -0.06
HMGA1P17096 AL118522.1-201ENST00000611368 560 ntBASIC14.65□□□□□ -0.06
HMGA1P17096 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC14.65□□□□□ -0.06
HMGA1P17096 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HMGA1P17096 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
HMGA1P17096 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC14.65□□□□□ -0.06
HMGA1P17096 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
HMGA1P17096 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
HMGA1P17096 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
HMGA1P17096 HSPA7-201ENST00000445535 1927 ntBASIC14.64□□□□□ -0.07
HMGA1P17096 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 CDCA7-203ENST00000410019 1488 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGA1P17096 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 LINC02486-201ENST00000604157 3000 ntBASIC14.64□□□□□ -0.07
HMGA1P17096 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HMGA1P17096 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGA1P17096 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC14.64□□□□□ -0.07
HMGA1P17096 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 STK16-203ENST00000409516 895 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGA1P17096 AC108734.2-201ENST00000420887 1069 ntBASIC14.64□□□□□ -0.07
HMGA1P17096 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 GNG10P1-201ENST00000452289 199 ntBASIC14.64□□□□□ -0.07
HMGA1P17096 EEF1GP8-201ENST00000506566 1154 ntBASIC14.64□□□□□ -0.07
HMGA1P17096 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HMGA1P17096 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.64□□□□□ -0.07
HMGA1P17096 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC14.64□□□□□ -0.07
HMGA1P17096 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
HMGA1P17096 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 AC152010.1-201ENST00000415779 2006 ntBASIC14.64□□□□□ -0.07
HMGA1P17096 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC14.64□□□□□ -0.07
HMGA1P17096 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 LAMA1-209ENST00000638611 1310 ntTSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
HMGA1P17096 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC14.64□□□□□ -0.07
HMGA1P17096 RCC2P1-201ENST00000452257 1476 ntBASIC14.63□□□□□ -0.07
HMGA1P17096 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.63□□□□□ -0.07
HMGA1P17096 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
HMGA1P17096 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
HMGA1P17096 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms