Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.74■□□□□ 0.91
LRFN1Q9P244 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.74■□□□□ 0.91
LRFN1Q9P244 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 MIR4767-201ENST00000582827 78 ntBASIC20.74■□□□□ 0.91
LRFN1Q9P244 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.74■□□□□ 0.91
LRFN1Q9P244 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LRFN1Q9P244 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRFN1Q9P244 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.73■□□□□ 0.91
LRFN1Q9P244 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LRFN1Q9P244 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.73■□□□□ 0.91
LRFN1Q9P244 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LRFN1Q9P244 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.73■□□□□ 0.91
LRFN1Q9P244 AC011298.3-201ENST00000615796 283 ntBASIC20.73■□□□□ 0.91
LRFN1Q9P244 AC009086.3-201ENST00000623486 1008 ntBASIC20.73■□□□□ 0.91
LRFN1Q9P244 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.73■□□□□ 0.91
LRFN1Q9P244 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.72■□□□□ 0.91
LRFN1Q9P244 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRFN1Q9P244 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.72■□□□□ 0.91
LRFN1Q9P244 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
LRFN1Q9P244 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRFN1Q9P244 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.72■□□□□ 0.91
LRFN1Q9P244 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
LRFN1Q9P244 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRFN1Q9P244 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LRFN1Q9P244 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LRFN1Q9P244 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
LRFN1Q9P244 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRFN1Q9P244 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRFN1Q9P244 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.71■□□□□ 0.91
LRFN1Q9P244 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.71■□□□□ 0.91
LRFN1Q9P244 AF213884.3-201ENST00000563833 479 ntBASIC20.71■□□□□ 0.91
LRFN1Q9P244 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRFN1Q9P244 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LRFN1Q9P244 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.71■□□□□ 0.91
LRFN1Q9P244 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.71■□□□□ 0.91
LRFN1Q9P244 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
LRFN1Q9P244 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.7■□□□□ 0.9
LRFN1Q9P244 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.7■□□□□ 0.9
LRFN1Q9P244 AC006455.2-201ENST00000429931 906 ntBASIC20.7■□□□□ 0.9
LRFN1Q9P244 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.7■□□□□ 0.9
LRFN1Q9P244 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.7■□□□□ 0.9
LRFN1Q9P244 AL136967.2-201ENST00000623968 743 ntBASIC20.7■□□□□ 0.9
LRFN1Q9P244 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRFN1Q9P244 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRFN1Q9P244 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
LRFN1Q9P244 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN1Q9P244 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LRFN1Q9P244 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN1Q9P244 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
LRFN1Q9P244 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN1Q9P244 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
LRFN1Q9P244 ZNRF2P3-201ENST00000424200 374 ntBASIC20.69■□□□□ 0.9
LRFN1Q9P244 AP001330.3-201ENST00000520123 633 ntBASIC20.69■□□□□ 0.9
LRFN1Q9P244 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LRFN1Q9P244 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN1Q9P244 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN1Q9P244 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
LRFN1Q9P244 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.69■□□□□ 0.9
LRFN1Q9P244 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
LRFN1Q9P244 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
LRFN1Q9P244 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
LRFN1Q9P244 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LRFN1Q9P244 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 MIR939-201ENST00000401314 82 ntBASIC20.68■□□□□ 0.9
LRFN1Q9P244 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
LRFN1Q9P244 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
LRFN1Q9P244 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
LRFN1Q9P244 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN1Q9P244 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
LRFN1Q9P244 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
LRFN1Q9P244 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.67■□□□□ 0.9
LRFN1Q9P244 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.67■□□□□ 0.9
LRFN1Q9P244 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.67■□□□□ 0.9
LRFN1Q9P244 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN1Q9P244 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN1Q9P244 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
LRFN1Q9P244 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LRFN1Q9P244 AC091305.1-201ENST00000479476 895 ntBASIC20.66■□□□□ 0.9
LRFN1Q9P244 MIR3181-201ENST00000578512 73 ntBASIC20.66■□□□□ 0.9
LRFN1Q9P244 AC136469.2-201ENST00000623944 1028 ntBASIC20.66■□□□□ 0.9
LRFN1Q9P244 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.66■□□□□ 0.9
LRFN1Q9P244 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRFN1Q9P244 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRFN1Q9P244 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LRFN1Q9P244 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN1Q9P244 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LRFN1Q9P244 AC141586.4-201ENST00000624558 1573 ntBASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms