Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
COL20A1Q9P218 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.77■■□□□ 1.72
COL20A1Q9P218 MIR3181-201ENST00000578512 73 ntBASIC25.77■■□□□ 1.72
COL20A1Q9P218 AC009086.3-201ENST00000623486 1008 ntBASIC25.77■■□□□ 1.72
COL20A1Q9P218 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC25.77■■□□□ 1.72
COL20A1Q9P218 AL139125.2-201ENST00000623134 1869 ntBASIC25.77■■□□□ 1.72
COL20A1Q9P218 LINC01124-201ENST00000409786 2117 ntBASIC25.76■■□□□ 1.71
COL20A1Q9P218 GUK1-205ENST00000366722 850 ntTSL 3 BASIC25.76■■□□□ 1.71
COL20A1Q9P218 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.76■■□□□ 1.71
COL20A1Q9P218 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
COL20A1Q9P218 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.76■■□□□ 1.71
COL20A1Q9P218 AC011298.3-201ENST00000615796 283 ntBASIC25.76■■□□□ 1.71
COL20A1Q9P218 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
COL20A1Q9P218 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
COL20A1Q9P218 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
COL20A1Q9P218 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.75■■□□□ 1.71
COL20A1Q9P218 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.75■■□□□ 1.71
COL20A1Q9P218 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
COL20A1Q9P218 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
COL20A1Q9P218 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.75■■□□□ 1.71
COL20A1Q9P218 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.75■■□□□ 1.71
COL20A1Q9P218 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.75■■□□□ 1.71
COL20A1Q9P218 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.75■■□□□ 1.71
COL20A1Q9P218 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.75■■□□□ 1.71
COL20A1Q9P218 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.75■■□□□ 1.71
COL20A1Q9P218 AL138724.1-201ENST00000606771 1088 ntBASIC25.75■■□□□ 1.71
COL20A1Q9P218 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.74■■□□□ 1.71
COL20A1Q9P218 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
COL20A1Q9P218 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.74■■□□□ 1.71
COL20A1Q9P218 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
COL20A1Q9P218 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.74■■□□□ 1.71
COL20A1Q9P218 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.74■■□□□ 1.71
COL20A1Q9P218 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.73■■□□□ 1.71
COL20A1Q9P218 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
COL20A1Q9P218 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC25.73■■□□□ 1.71
COL20A1Q9P218 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.73■■□□□ 1.71
COL20A1Q9P218 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
COL20A1Q9P218 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
COL20A1Q9P218 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
COL20A1Q9P218 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC25.72■■□□□ 1.71
COL20A1Q9P218 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL20A1Q9P218 LINC00543-201ENST00000567234 1845 ntBASIC25.72■■□□□ 1.71
COL20A1Q9P218 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.72■■□□□ 1.71
COL20A1Q9P218 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.72■■□□□ 1.71
COL20A1Q9P218 AC004812.2-201ENST00000611079 2094 ntBASIC25.72■■□□□ 1.71
COL20A1Q9P218 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL20A1Q9P218 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.71■■□□□ 1.71
COL20A1Q9P218 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
COL20A1Q9P218 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.71■■□□□ 1.71
COL20A1Q9P218 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL20A1Q9P218 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
COL20A1Q9P218 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.71■■□□□ 1.71
COL20A1Q9P218 AC136469.2-201ENST00000623944 1028 ntBASIC25.71■■□□□ 1.71
COL20A1Q9P218 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.71■■□□□ 1.71
COL20A1Q9P218 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
COL20A1Q9P218 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC25.7■■□□□ 1.71
COL20A1Q9P218 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.7■■□□□ 1.71
COL20A1Q9P218 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.7■■□□□ 1.71
COL20A1Q9P218 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
COL20A1Q9P218 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC25.7■■□□□ 1.7
COL20A1Q9P218 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC25.7■■□□□ 1.7
COL20A1Q9P218 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.7■■□□□ 1.7
COL20A1Q9P218 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.7
COL20A1Q9P218 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.7■■□□□ 1.7
COL20A1Q9P218 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
COL20A1Q9P218 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL20A1Q9P218 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL20A1Q9P218 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL20A1Q9P218 AC105265.2-201ENST00000467189 838 ntBASIC25.69■■□□□ 1.7
COL20A1Q9P218 STOX2-205ENST00000513034 807 ntTSL 3 BASIC25.69■■□□□ 1.7
COL20A1Q9P218 pRNA.6-201ENST00000610482 90 ntBASIC25.69■■□□□ 1.7
COL20A1Q9P218 pRNA.5-201ENST00000612139 90 ntBASIC25.69■■□□□ 1.7
COL20A1Q9P218 pRNA.11-201ENST00000618423 90 ntBASIC25.69■■□□□ 1.7
COL20A1Q9P218 pRNA.13-201ENST00000619112 90 ntBASIC25.69■■□□□ 1.7
COL20A1Q9P218 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
COL20A1Q9P218 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
COL20A1Q9P218 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
COL20A1Q9P218 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC25.68■■□□□ 1.7
COL20A1Q9P218 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL20A1Q9P218 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL20A1Q9P218 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
COL20A1Q9P218 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
COL20A1Q9P218 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Retrieved 100 of 98,524 protein–RNA pairs in 13.6 ms