Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HINT3Q9NQE9 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HINT3Q9NQE9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.37■□□□□ 0.85
HINT3Q9NQE9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HINT3Q9NQE9 ALDH1A3-203ENST00000557963 1670 ntBASIC20.37■□□□□ 0.85
HINT3Q9NQE9 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.37■□□□□ 0.85
HINT3Q9NQE9 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HINT3Q9NQE9 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HINT3Q9NQE9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 RARRES2P1-201ENST00000474487 481 ntBASIC20.36■□□□□ 0.85
HINT3Q9NQE9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 AC019171.1-201ENST00000601251 1056 ntBASIC20.36■□□□□ 0.85
HINT3Q9NQE9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.36■□□□□ 0.85
HINT3Q9NQE9 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HINT3Q9NQE9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HINT3Q9NQE9 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HINT3Q9NQE9 PVT1_1.1-201ENST00000615125 194 ntBASIC20.35■□□□□ 0.85
HINT3Q9NQE9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
HINT3Q9NQE9 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HINT3Q9NQE9 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HINT3Q9NQE9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 YBX1P4-201ENST00000392794 808 ntBASIC20.34■□□□□ 0.85
HINT3Q9NQE9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 AC011551.1-201ENST00000614101 683 ntBASIC20.34■□□□□ 0.85
HINT3Q9NQE9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 KRT8P33-201ENST00000508125 1423 ntBASIC20.34■□□□□ 0.85
HINT3Q9NQE9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 GUSBP5-202ENST00000510805 1989 ntBASIC20.34■□□□□ 0.85
HINT3Q9NQE9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HINT3Q9NQE9 LINC00565-201ENST00000562710 2331 ntBASIC20.33■□□□□ 0.85
HINT3Q9NQE9 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.33■□□□□ 0.85
HINT3Q9NQE9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC20.33■□□□□ 0.84
HINT3Q9NQE9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HINT3Q9NQE9 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HINT3Q9NQE9 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms