Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.07■□□□□ 0.96
VCX3AQ9NNX9 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCX3AQ9NNX9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.07■□□□□ 0.96
VCX3AQ9NNX9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.07■□□□□ 0.96
VCX3AQ9NNX9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCX3AQ9NNX9 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
VCX3AQ9NNX9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCX3AQ9NNX9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCX3AQ9NNX9 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCX3AQ9NNX9 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCX3AQ9NNX9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCX3AQ9NNX9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC21.06■□□□□ 0.96
VCX3AQ9NNX9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC21.06■□□□□ 0.96
VCX3AQ9NNX9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCX3AQ9NNX9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
VCX3AQ9NNX9 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.03■□□□□ 0.96
VCX3AQ9NNX9 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
VCX3AQ9NNX9 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
VCX3AQ9NNX9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
VCX3AQ9NNX9 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
VCX3AQ9NNX9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.02■□□□□ 0.95
VCX3AQ9NNX9 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
VCX3AQ9NNX9 AL359504.2-201ENST00000605506 1601 ntBASIC21■□□□□ 0.95
VCX3AQ9NNX9 HLA-L-211ENST00000482052 1765 ntBASIC21■□□□□ 0.95
VCX3AQ9NNX9 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
VCX3AQ9NNX9 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21■□□□□ 0.95
VCX3AQ9NNX9 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VCX3AQ9NNX9 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VCX3AQ9NNX9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VCX3AQ9NNX9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms