Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 GRAMD4P2-201ENST00000423297 1097 ntBASIC26.24■■□□□ 1.79
RPAP3Q9H6T3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC26.24■■□□□ 1.79
RPAP3Q9H6T3 MPST-208ENST00000628507 698 ntTSL 5 BASIC26.24■■□□□ 1.79
RPAP3Q9H6T3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.24■■□□□ 1.79
RPAP3Q9H6T3 AP003733.4-201ENST00000623785 1697 ntBASIC26.24■■□□□ 1.79
RPAP3Q9H6T3 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
RPAP3Q9H6T3 SNX3-202ENST00000349379 890 ntTSL 2 BASIC26.23■■□□□ 1.79
RPAP3Q9H6T3 JTB-203ENST00000368589 1216 ntTSL 2 BASIC26.23■■□□□ 1.79
RPAP3Q9H6T3 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.23■■□□□ 1.79
RPAP3Q9H6T3 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.23■■□□□ 1.79
RPAP3Q9H6T3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC26.23■■□□□ 1.79
RPAP3Q9H6T3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.23■■□□□ 1.79
RPAP3Q9H6T3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
RPAP3Q9H6T3 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 AC141586.4-201ENST00000624558 1573 ntBASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.22■■□□□ 1.79
RPAP3Q9H6T3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 TMEM202-AS1-202ENST00000565181 2325 ntBASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
RPAP3Q9H6T3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
RPAP3Q9H6T3 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
RPAP3Q9H6T3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC26.2■■□□□ 1.78
RPAP3Q9H6T3 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RPAP3Q9H6T3 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
RPAP3Q9H6T3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
RPAP3Q9H6T3 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.18■■□□□ 1.78
RPAP3Q9H6T3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 AL162430.1-201ENST00000480705 870 ntBASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 AC126544.1-201ENST00000580842 1059 ntBASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
RPAP3Q9H6T3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.16■■□□□ 1.78
RPAP3Q9H6T3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP3Q9H6T3 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP3Q9H6T3 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC26.16■■□□□ 1.78
RPAP3Q9H6T3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP3Q9H6T3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
RPAP3Q9H6T3 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 SLC47A1P1-202ENST00000449666 945 ntBASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.15■■□□□ 1.78
RPAP3Q9H6T3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
RPAP3Q9H6T3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
RPAP3Q9H6T3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
RPAP3Q9H6T3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC26.14■■□□□ 1.78
RPAP3Q9H6T3 SP2-202ENST00000613139 908 ntTSL 5 BASIC26.14■■□□□ 1.78
RPAP3Q9H6T3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC26.14■■□□□ 1.78
RPAP3Q9H6T3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC26.13■■□□□ 1.77
RPAP3Q9H6T3 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
RPAP3Q9H6T3 AC138932.3-201ENST00000567634 1902 ntBASIC26.12■■□□□ 1.77
RPAP3Q9H6T3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC26.12■■□□□ 1.77
RPAP3Q9H6T3 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RPAP3Q9H6T3 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
RPAP3Q9H6T3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.12■■□□□ 1.77
RPAP3Q9H6T3 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
RPAP3Q9H6T3 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC26.11■■□□□ 1.77
RPAP3Q9H6T3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.11■■□□□ 1.77
RPAP3Q9H6T3 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
RPAP3Q9H6T3 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
RPAP3Q9H6T3 TSPY26P-201ENST00000476365 1326 ntBASIC26.11■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms