Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CPNE1Q99829 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
CPNE1Q99829 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
CPNE1Q99829 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CPNE1Q99829 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.59■■□□□ 1.21
CPNE1Q99829 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CPNE1Q99829 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CPNE1Q99829 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CPNE1Q99829 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
CPNE1Q99829 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CPNE1Q99829 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CPNE1Q99829 BEX3-202ENST00000372634 753 ntTSL 2 BASIC22.58■■□□□ 1.21
CPNE1Q99829 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC22.58■■□□□ 1.21
CPNE1Q99829 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
CPNE1Q99829 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.58■■□□□ 1.21
CPNE1Q99829 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
CPNE1Q99829 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC22.58■■□□□ 1.21
CPNE1Q99829 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CPNE1Q99829 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
CPNE1Q99829 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
CPNE1Q99829 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC22.58■■□□□ 1.2
CPNE1Q99829 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CPNE1Q99829 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CPNE1Q99829 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPNE1Q99829 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC22.57■■□□□ 1.2
CPNE1Q99829 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPNE1Q99829 TSPY13P-201ENST00000338964 914 ntBASIC22.57■■□□□ 1.2
CPNE1Q99829 AC004448.1-201ENST00000458332 883 ntBASIC22.57■■□□□ 1.2
CPNE1Q99829 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.57■■□□□ 1.2
CPNE1Q99829 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.57■■□□□ 1.2
CPNE1Q99829 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
CPNE1Q99829 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPNE1Q99829 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC22.57■■□□□ 1.2
CPNE1Q99829 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22.57■■□□□ 1.2
CPNE1Q99829 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPNE1Q99829 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CPNE1Q99829 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CPNE1Q99829 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CPNE1Q99829 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CPNE1Q99829 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CPNE1Q99829 AC010980.1-201ENST00000587192 1142 ntBASIC22.56■■□□□ 1.2
CPNE1Q99829 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
CPNE1Q99829 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.56■■□□□ 1.2
CPNE1Q99829 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CPNE1Q99829 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CPNE1Q99829 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC22.55■■□□□ 1.2
CPNE1Q99829 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CPNE1Q99829 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CPNE1Q99829 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CPNE1Q99829 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC22.55■■□□□ 1.2
CPNE1Q99829 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC22.55■■□□□ 1.2
CPNE1Q99829 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC22.55■■□□□ 1.2
CPNE1Q99829 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.55■■□□□ 1.2
CPNE1Q99829 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CPNE1Q99829 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
CPNE1Q99829 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.54■■□□□ 1.2
CPNE1Q99829 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
CPNE1Q99829 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CPNE1Q99829 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.54■■□□□ 1.2
CPNE1Q99829 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC22.54■■□□□ 1.2
CPNE1Q99829 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CPNE1Q99829 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CPNE1Q99829 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CPNE1Q99829 AC079630.1-202ENST00000618127 1840 ntBASIC22.53■■□□□ 1.2
CPNE1Q99829 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CPNE1Q99829 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
CPNE1Q99829 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
CPNE1Q99829 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CPNE1Q99829 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.52■■□□□ 1.2
CPNE1Q99829 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC22.52■■□□□ 1.2
CPNE1Q99829 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CPNE1Q99829 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.52■■□□□ 1.2
CPNE1Q99829 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.51■■□□□ 1.19
CPNE1Q99829 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC22.51■■□□□ 1.19
CPNE1Q99829 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC22.51■■□□□ 1.19
CPNE1Q99829 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.51■■□□□ 1.19
CPNE1Q99829 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.51■■□□□ 1.19
CPNE1Q99829 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.51■■□□□ 1.19
CPNE1Q99829 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CPNE1Q99829 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CPNE1Q99829 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.5■■□□□ 1.19
CPNE1Q99829 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CPNE1Q99829 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC22.5■■□□□ 1.19
CPNE1Q99829 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CPNE1Q99829 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CPNE1Q99829 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CPNE1Q99829 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CPNE1Q99829 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CPNE1Q99829 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CPNE1Q99829 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
CPNE1Q99829 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC22.49■■□□□ 1.19
CPNE1Q99829 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.49■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms