Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC60Q8IWA6 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CCDC60Q8IWA6 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC60Q8IWA6 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.27■■□□□ 1.64
CCDC60Q8IWA6 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC60Q8IWA6 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.27■■□□□ 1.64
CCDC60Q8IWA6 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.27■■□□□ 1.64
CCDC60Q8IWA6 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC60Q8IWA6 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
CCDC60Q8IWA6 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC60Q8IWA6 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC60Q8IWA6 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.26■■□□□ 1.63
CCDC60Q8IWA6 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CCDC60Q8IWA6 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.26■■□□□ 1.63
CCDC60Q8IWA6 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.26■■□□□ 1.63
CCDC60Q8IWA6 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC60Q8IWA6 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.25■■□□□ 1.63
CCDC60Q8IWA6 AC241377.3-202ENST00000626088 1088 ntBASIC25.25■■□□□ 1.63
CCDC60Q8IWA6 AC241585.3-202ENST00000628937 1088 ntBASIC25.25■■□□□ 1.63
CCDC60Q8IWA6 AC245100.8-202ENST00000629247 1058 ntBASIC25.25■■□□□ 1.63
CCDC60Q8IWA6 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
CCDC60Q8IWA6 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
CCDC60Q8IWA6 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
CCDC60Q8IWA6 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.24■■□□□ 1.63
CCDC60Q8IWA6 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC60Q8IWA6 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CCDC60Q8IWA6 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.24■■□□□ 1.63
CCDC60Q8IWA6 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 SUDS3P1-201ENST00000505831 966 ntBASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 AC009086.3-201ENST00000623486 1008 ntBASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
CCDC60Q8IWA6 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 EDA-201ENST00000338901 1233 ntBASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 MIR4767-201ENST00000582827 78 ntBASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CCDC60Q8IWA6 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.21■■□□□ 1.63
CCDC60Q8IWA6 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC60Q8IWA6 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.21■■□□□ 1.63
CCDC60Q8IWA6 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
CCDC60Q8IWA6 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.2■■□□□ 1.63
CCDC60Q8IWA6 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
CCDC60Q8IWA6 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.2■■□□□ 1.62
CCDC60Q8IWA6 AC142381.2-201ENST00000566120 298 ntBASIC25.2■■□□□ 1.62
CCDC60Q8IWA6 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.2■■□□□ 1.62
CCDC60Q8IWA6 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC25.2■■□□□ 1.62
CCDC60Q8IWA6 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
CCDC60Q8IWA6 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 AL138724.1-201ENST00000606771 1088 ntBASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 AC011298.3-201ENST00000615796 283 ntBASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 AL355001.2-201ENST00000620617 1191 ntBASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
CCDC60Q8IWA6 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CCDC60Q8IWA6 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 AP001330.3-201ENST00000520123 633 ntBASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 MIR3181-201ENST00000578512 73 ntBASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 ABCB10P4-201ENST00000566803 2184 ntBASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.17■■□□□ 1.62
CCDC60Q8IWA6 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.16■■□□□ 1.62
CCDC60Q8IWA6 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC60Q8IWA6 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC60Q8IWA6 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC60Q8IWA6 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CCDC60Q8IWA6 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
CCDC60Q8IWA6 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.16■■□□□ 1.62
CCDC60Q8IWA6 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC25.16■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms