Protein–RNA interactions for Protein: Q86VR2

RETREG3, Reticulophagy regulator 3, humanhuman

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3Q86VR2 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.56■■□□□ 1.04
RETREG3Q86VR2 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.55■■□□□ 1.04
RETREG3Q86VR2 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
RETREG3Q86VR2 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RETREG3Q86VR2 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.54■■□□□ 1.04
RETREG3Q86VR2 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.54■■□□□ 1.04
RETREG3Q86VR2 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
RETREG3Q86VR2 DUX4L9-201ENST00000449051 1259 ntBASIC21.54■■□□□ 1.04
RETREG3Q86VR2 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
RETREG3Q86VR2 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
RETREG3Q86VR2 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
RETREG3Q86VR2 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
RETREG3Q86VR2 LONRF2P2-201ENST00000439212 571 ntBASIC21.53■■□□□ 1.04
RETREG3Q86VR2 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC21.53■■□□□ 1.04
RETREG3Q86VR2 MIR6765-201ENST00000614092 87 ntBASIC21.53■■□□□ 1.04
RETREG3Q86VR2 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
RETREG3Q86VR2 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
RETREG3Q86VR2 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
RETREG3Q86VR2 RNF126P1-201ENST00000567452 1320 ntBASIC21.52■■□□□ 1.03
RETREG3Q86VR2 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.52■■□□□ 1.03
RETREG3Q86VR2 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RETREG3Q86VR2 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RETREG3Q86VR2 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RETREG3Q86VR2 AC137767.1-201ENST00000602918 1920 ntBASIC21.51■■□□□ 1.03
RETREG3Q86VR2 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RETREG3Q86VR2 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RETREG3Q86VR2 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RETREG3Q86VR2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.51■■□□□ 1.03
RETREG3Q86VR2 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.5■■□□□ 1.03
RETREG3Q86VR2 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC21.49■■□□□ 1.03
RETREG3Q86VR2 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
RETREG3Q86VR2 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RETREG3Q86VR2 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RETREG3Q86VR2 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RETREG3Q86VR2 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RETREG3Q86VR2 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 AC007375.3-201ENST00000600936 2314 ntBASIC21.48■■□□□ 1.03
RETREG3Q86VR2 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
RETREG3Q86VR2 AC242852.2-201ENST00000615738 1807 ntBASIC21.48■■□□□ 1.03
RETREG3Q86VR2 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 AC079630.1-202ENST00000618127 1840 ntBASIC21.47■■□□□ 1.03
RETREG3Q86VR2 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC21.47■■□□□ 1.03
RETREG3Q86VR2 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 AC011551.1-201ENST00000614101 683 ntBASIC21.46■■□□□ 1.03
RETREG3Q86VR2 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
RETREG3Q86VR2 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms